SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3605

Length: 223 nt

UniGene Fasta

>biog2_v2.0_unigene3605
ACATTGGCAGGATATCTTCCATTGAGATCAATCATAAAGCGGTTGATTCAGCTAGGAAGGGTCAACAGGTGGCTATGAAGATTATTGGGAATAGCGCTGAGGAAGCACAGAAAATGATTGGTAGGCATTTTGAAGCTGAGGATGAACTAGTGAGTCATGTCACTAGGAGATCTATAGATATATTAAAAGAAATTACAGGGATGACCTGTCACTTGAAGATTGG

Ace file of the UniGene biog2_v2.0_unigene3605

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20809	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TK03_PHYPA	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	eukaryotic translation initiation factor 5b	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Ribosomal protein L5	IPR002132	-	-
Sma3	tRNA-binding domain	IPR002547	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Translation initiation factor IF- 2	IPR015760	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZE9

Fln msg: STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 73 - 315

Fln protein: IGRISSIEINHKAVDSARKGQQVAMKIIGNSAEEAQKMIGRHFEAEDELVSHVTRRSIDILKEITGMTCHLKI

Protein Length: 74

Fln nts: ACATTGGCAGGATATCTTCCATTGAGATCAATCATAAAGCGGTTGATTCAGCTAGGAAGGGTCAACAGGTGGCTATGAAGATTATTGGGAATAGCGCTGAGGAAGCACAGAAAATGATTGGTAGGCATTTTGAAGCTGAGGATGAACTAGTGAGTCATGTCACTAGGAGATCTATAGATATATTAAAAGAAATTACAGGGATGACCTGTCACTTGAAGATTGG

Fln Alignment:

Contig3605___IGRISSIEINHKAVDSARKGQQVAMKIIGNSAEEAQKMIGRHFEAEDELVSHVTRRSIDILKE
A9NZE9_________________IGRISSIEINHKAVDTAKKGQQVAMKIIGNNPEEAQKMIGRHFEVEDELVSHVTRRSIDILKE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
20	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain