SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3600

Length: 1273 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3600

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6916	16/24
SustainPine v2.0	sp_v2.0_unigene15742	6/24

Source	Descriptions	Term	Type	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9S209_RICCO	-	-	67%
FL-Next	tr=4-coumarate:CoA ligase; Pinus massoniana.	-	-	77%
Blast2go	4-coumarate: ligase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing).	EC:1.13.12.7	-	0.0	83%
Blast2go	4-coumarate--CoA ligase.	EC:6.2.1.12	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	83%
Blast2go	Phenylalanine metabolism	00360	83%
Blast2go	Phenylpropanoid biosynthesis	00940	83%
Blast2go	Biosynthesis of phenylpropanoids	01061	83%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	phenylpropanoid metabolic process	GO:0009698	Biological Process	83%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity	GO:0047077	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C1KBY2

Fln msg: your sequence is shorter than subject: 357 - 537

Fln protein: GLPKGVMLTHKGLVSSVAQQVDGENPNLYLHSEDVVLCVLPLFHIYSLNSVLLCSLRAGSAILLMHKFEIGSLLDLVQRFKVTVAPVVPPIVIAFAKNALVESYDLSSIRVVLSGAAPLGKELEDALRLRLPRATFGQGYGMTEAGPVLSMCLAFAKEPFPMKSGSCGTVVRNAQMKIVDPDTGKCLPYNQPGEICIRGPQIMKGYLNDAESTARTIDEDGWLHTGDIGYIDDDDEVFIVDRVKEIIKYKGFQVPPAELEAILITHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFDLTEDEIKQFVAKQVVFYKKLHKVYFIHAIPKSPAGKILRKDLRAKLSAPTSTSTVEIKA*

Protein Length: 358

Fln nts: CGGGGCTCCCCAAGGGTGTGATGTTGACACACAAGGGGCTCGTCTCTAGCGTCGCCCAACAAGTCGATGGAGAAAATCCCAATCTGTATTTGCATTCTGAGGATGTGGTGCTGTGCGTACTGCCTCTGTTTCATATCTACTCGCTCAATTCTGTGCTGCTCTGCTCGCTCAGGGCCGGGTCTGCTATTCTGCTCATGCACAAGTTTGAGATCGGGAGCCTGCTGGATCTGGTGCAGAGGTTCAAGGTCACGGTGGCGCCTGTCGTGCCTCCCATTGTTATCGCCTTTGCCAAGAACGCGCTCGTGGAAAGCTACGATCTGTCATCCATTAGGGTTGTGCTGTCCGGTGCCGCGCCTCTCGGAAAGGAGCTGGAGGATGCATTGAGGCTACGACTTCCCAGAGCCACTTTTGGTCAGGGATACGGTATGACAGAGGCAGGACCGGTGCTATCAATGTGTCTGGCCTTCGCTAAGGAGCCCTTTCCCATGAAGTCCGGGTCGTGTGGAACGGTTGTTCGGAATGCCCAGATGAAGATCGTTGACCCCGACACGGGCAAGTGTCTTCCCTACAACCAACCGGGAGAAATTTGCATCAGAGGGCCCCAGATTATGAAAGGGTATCTGAACGATGCCGAGTCTACAGCCAGAACTATCGATGAAGATGGGTGGCTGCATACTGGGGATATTGGTTATATTGATGACGATGACGAAGTTTTCATTGTGGACAGAGTGAAAGAGATTATCAAATATAAGGGCTTTCAGGTACCTCCAGCTGAATTAGAGGCCATTCTCATCACCCATCCATCTATTGCAGATGCAGCAGTTGTACCTCAAAAGGATGAAGTTGCAGGAGAGGTTCCAGTAGCCTTTGTGGTGAGATCAAATGGATTTGATCTCACAGAAGATGAAATCAAACAATTTGTGGCTAAACAGGTGGTGTTCTACAAGAAGCTGCACAAGGTGTATTTCATCCACGCAATTCCCAAGTCTCCGGCTGGAAAAATACTGCGAAAGGATTTGAGGGCGAAGCTCTCTGCCCCCACCTCCACCTCCACCGTTGAAATCAAAGCATGA___TATTCTTTTTTCTAATCGATTTTCTCTCTTCAACCAGGGTTTGTGGGCATGCCATAGACGCATGACGGCGGCCAATACCTGTCAGTCCAATAATGTCACCCCTTTCTGGACTCCTTTTTCGAGATATATTTATGGATTCCTGCTACTGTGTGAGGGAGGCATGATTATTAAGAGTAATTAGGATAGAGAGAAAGCCATTG

Fln Alignment:

Contig3600___GLPKGVMLTHKGLVSSVAQQVDGENPNLYLHSEDVVLCVLPLFHIYSLNSVLLCSLRAGSAILLMHKFEIGSLLDLVQRFKVTXXXXXXXXXXXFAKNALVESYDLSSIRVVLSGAAPLGKELEDALRLRLPRATFGQGYGMTEAGPVLSMCLAFAKEPFPMKSGSCGTVVRNAQMKIVDPDTGKCLPYNQPGEICIRGPQIMKGYLNDAESTARTIDEDGWLHTGDIGYIDDDDEVFIVDRVKEIIKYKGFQVPPAELEAILITHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFDLTEDEIKQFVAKQVVFYKKLHKVYFIHAIPKSPAGKILRKDLRAKLSA
C1KBY2_________________GLPKGVMLTHKGLVSSVAQQVDGENPNLYFHSEDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTVAPIVPPIVLDITKSPIVSQYDVSSVRIIMSGAAPLGKELEDALRERFPKAIFGQGYGMTEAGPVLAMNLAFAKNPFPVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEIMKGYINDPESTAATIDEEGWLHTGDVGYIDDDEEIFIVDRVKEIIKYKGFQVAPAELEALLVAHPSIADAAVVPQKHEETGEVPVAFVVKSS--EISEQEIKEFVAKQVVFYKKIHRVYFVDAIPKSPSGKILRKDLRSRLAA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1122	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain