SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3593

Length: 352 nt

UniGene Fasta

>biog2_v2.0_unigene3593
TCGCAGAAAGGAAAAAGGAAGTCTGGCAGTGATGATGTAAAATCAAGTGGAGCTGGATCTACAAAGAAATTGAAAACAGAGGATTCAAAGTCCACTGCACCATCCACTGTTAAAGAGGAAAGTACACCATCAAAAAATGTTTCATCTTCTGCAAAGCAGGCACCACCAGCCTCTAACAAGGCTGTTGGTGCACAAGCAACAGGAGCAGTGACAGAGGAAGAAGTGCGGACTGCTTTACGGCAAATGGCTCCAGTCACAACCCAGGAACTTGTAGCAAAATTTAAGGCCAGACTTAAGACCCCGGATGACAAGTCATCATTTGCTGCTGTGTTGAAGAAGATTTCTCGCATCC

Ace file of the UniGene biog2_v2.0_unigene3593

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11710	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative transcription initiation factor [Oryza sativa Japonica Group] gb\|ABB46979.1\| mutant TFIIF-alpha, putative, expressed [Oryza sativa Japonica Group]	-	-	2.0e-32	36%
FL-Next	Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74	-	-	0.0	45%
Blast2go	transcription initiation factor iif subunit alpha	-	-	7.42688e-44	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	7.42688e-44	60%
Blast2go	cellular macromolecule biosynthetic process	GO:0034645	Biological Process	7.42688e-44	60%
Blast2go	gene expression	GO:0010467	Biological Process	7.42688e-44	60%
Blast2go	protein C-terminus binding	GO:0008022	Molecular Function	7.42688e-44	60%
Blast2go	chloroplast	GO:0009507	Cellular Component	7.42688e-44	60%
Blast2go	nucleus	GO:0005634	Cellular Component	7.42688e-44	60%

Source	InterPros	Term	Type	Identity
Sma3	Photosystem I PsaA/PsaB	IPR001280	-	-
Sma3	Transcription initiation factor IIF, alpha subunit	IPR008851	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9SU25-2

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 117 - 543

Fln protein: SQKGKRKSGSDDVKSSGAGSTKKLKTEDSKSTAPSTVKEESTPSKNVSSSAKQAPPASNKAVGAQATGAVTEEEVRTALRQMAPVTTQELVAKFKARLKTPDDKSSFAAVLKKISRI

Protein Length: 118

Fln nts: TCGCAGAAAGGAAAAAGGAAGTCTGGCAGTGATGATGTAAAATCAAGTGGAGCTGGATCTACAAAGAAATTGAAAACAGAGGATTCAAAGTCCACTGCACCATCCACTGTTAAAGAGGAAAGTACACCATCAAAAAATGTTTCATCTTCTGCAAAGCAGGCACCACCAGCCTCTAACAAGGCTGTTGGTGCACAAGCAACAGGAGCAGTGACAGAGGAAGAAGTGCGGACTGCTTTACGGCAAATGGCTCCAGTCACAACCCAGGAACTTGTAGCAAAATTTAAGGCCAGACTTAAGACCCCGGATGACAAGTCATCATTTGCTGCTGTGTTGAAGAAGATTTCTCGCATCC

Fln Alignment:

Contig3593___KGKRKSGSDDVKSSGAGSTKKLKTEDS-----KSTAPSTVKEESTPSKNVSSSAKQAPPASNKAVGAQATGAVTEEEVRTALRQMAPVTTQELVAKFKARLKTPDDKSSFAAVLKKISRI
Q9SU25-2_______________KGKRKLNDGDSKKPSSSVQKKVKTENDPKSSLKEERANTVSKSNTPTKAVKAEPASAPASSSSA----ATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain