SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3586

Length: 1826 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3586

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16224	55/55

Source	Descriptions	Term	Type	Identity
AutoFact	ATP synthase subunit beta, mitochondrial n=4 Tax=Nicotiana RepID=ATPBM_NICPL	-	-	84%
FL-Next	sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	atp synthase beta chain	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	89%
Blast2go	transmembrane transporter activity	GO:0022857	Molecular Function	89%
Blast2go	proton-transporting two-sector ATPase complex, catalytic domain	GO:0033178	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, F1 complex, beta subunit	IPR005722	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal	IPR000793	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal	IPR004100	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUR7

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 70 and 66, and possible frame ERROR between 385 and 393, your sequence is shorter than subject: 457 - 568

Fln protein: WVTGIKVVDLLAPYQRGGKIGxxxGAGVGKTVLIMELISIWERTPSGPLPWMKPRGLSVVRRF*TRDRPSRSLWAGPLLVAS*M*SGRLLMKRAN*RLSTSCQFIVRHLPLLSSQQSKKFL*LELRLxxxxLHHINVEERLGFLVELVLEKLFLSWN*STMLPRLMVVSLYLLVLESVLEKAMIYTGK*LRVVLSSLAKNRVKASVLLYMVK*MNHLVLVLVLGLQD*LLQSIFEMPKARMCCSSLTTFSVLHKQTLKCLLCWDVSLQLSDTSQLWLLILEVCKNVLQQPRRVPLLPCKLYMCQLMI*QIQHLQQHSPILMPPLCYLGRSQSLVYTQPLTHWILHPACFLLTF*EKTTIILLEVYRRSFRTTRTFRILLQF*VWMN*VKMIN*LCPGPERFSDS*VSPSMWLKFSRVLQENMLT*KRALLASRVF*MVNMMIFLSSRFIWLEVLMK*

Protein Length: 458

Fln nts: ATGGGTGACTGGAATTAAGGTTGTGGACCTTCTTGCACCATATCAACGTGGAGGAAAGATTGGCxxxxxxxxxGGAGCTGGTGTTGGAAAAACTGTTCTTATCATGGAACTGATCAGCATTTGGGAGAGAACACCGTCAGGACCATTGCCATGGATGAAACCGAGGGGCTTGTCCGTGGTCAGAAGGTTTTGAACACGGGATCGCCCATCACGATCCCTGTGGGCAGGGCCACTCTTGGTCGCATCATGAATGTGATCGGGGAGGCTATTGATGAAAAGGGCGAATTAAAGACTGAGCACTTCTTGCCAATTCATCGTGAGGCACCTTCCTTTGTTGAGCAGTCAACAGAGCAAGAAATTCTTGTGACTGGAATTAAGGTTGTGxxxxxxxxxCTTGCACCATATCAACGTGGAGGAAAGATTGGGCTTTTTGGTGGAGCTGGTGTTGGAAAAACTGTTCTTATCATGGAACTGATCAACAATGTTGCCAAGGCTCATGGTGGTTTCTCTGTATTTGCTGGTGTTGGAGAGCGTACTAGAGAAGGCAATGATTTATACAGGGAAATGATTGAGAGTGGTGTTATCAAGCTTGGCGAAAAACAGGGTGAAAGCAAGTGTGCTCTTGTATATGGTCAAATGAATGAACCACCTGGTGCTCGTGCTCGTGTTGGGCTTACAGGATTGACTGTTGCAGAGCATTTTCGAGATGCCGAAGGCCAGGATGTGTTGCTCTTCATTGACAACATTTTCCGTTTTACACAAGCAAACTCTGAAGTGTCTGCTTTGCTGGGACGTATCCCTTCAGCTGTCGGATACCAGCCAACTTTGGCTACTGATCTTGGAGGTTTGCAAGAACGTATTACAACAACCAAGAAGGGTTCCATTACTTCCGTGCAAGCTATATATGTGCCAGCTGATGATTTGACAGATCCAGCACCTGCAACAACATTCGCCCATCTTGATGCCACCACTGTGTTATCTAGGCAGATCTCAGAGCTTGGTATATACCCAGCCGTTGACCCACTGGATTCTACATCCCGCATGCTTTCTCCTCACATTCTAGGAGAAGACCACTATAATACTGCTCGAGGTGTACAGAAGGTCCTTCAGAACTACAAGAACCTTCAGGATATTATTGCAATTTTAGGTATGGATGAACTGAGTGAAGATGATAAACTGACTGTGTCCCGGGCCAGAAAGATTCAGCGATTCTTGAGTCAGCCCTTCCATGTGGCTGAAGTTTTCACGGGTGCTCCAGGAAAATATGTTGACCTGAAAGAGAGCATTGCTAGCTTCCAGGGTGTTTTAGATGGTAAATATGATGATCTTCCTGAGCAGTCGTTTTATATGGTTGGAGGTATTGATGAAGTGACAGCAAAGGCAGAGAAAATCACCAAGGATTCAGCAGTACCATCATAAGTTACTGCGTTTTGGCACTCTTTGTTGGTTATGGTTTGCCTATTGGGCGTTAGATTCACTTTTATTGGGTTTTAGGTCATGACTGCCTTGAGGACCATGTTTATCAATTATCAAAACCTCAAATTTTGCTGATTGTGGACTATTTATTGTCCATTGATTTCTTATTCAGCCACGGCTGTTCTACGGATTATTCCAAAAGTGCTTGTGGAAGAGATCTAAGAGCGTTTGCAGATCTCTTCTGCTCTTTTTATTCAATTCCCAAATAAGGATGCATGCAATTTTTTGCATTACATTTTGTGGATTTTTTCAATCTGTCCATTGAATGATTTAGAATGTTTTGAAGAGGCAGTTTTGATATAATAAATCAGAGAGATTCGAGAAAATATAGCCATATGGCAATCTTTGCCACTG

Fln Alignment:

Contig3586___VTGIKVVDLLAPYQRGGKIGFxGGAGVGKTVLIMELISxxxAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQGESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVSRARKIQRFLSQPFHVAEVFTGAPGKYVDLKESIASFQGVLDGKYDDLPEQSFYMVGGIDEVTAKAEKITKDSAVPS
A9NUR7_________________VTGIKVVDLLAPYQRGGKIGLxGGAGVGKTVLIMELINxxxAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQGESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVSRARKIQRFLSQPFHVAEVFTGAPGKYVDLKESIASFQGVLDGKYDDLPEQSFYMVGGIDEVTAKAEKITRESAVAS

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
379		33		66	0.997452
380		33	66		0.997452
382			66	33	0.997452
383		33	66		0.997452
387	33	66			0.997452
390	33			66	0.997452
392	33			66	0.997452
393	33			66	0.997452
395	33	66			0.997452
518	20		80		0.995493
521			20	80	0.995493
522			20	80	0.995493
716	80			20	0.995493
849	71		28		1.0
1092	66		33		0.997452
1280	85		14		0.993533
1302	12			87	0.992554
1304			12	87	0.992554
1305			12	87	0.992554
1306	87		12		0.992554
1356	11		88		0.923564
1358	88		11		0.923564
1359			11	88	0.923564
1360			11	88	0.923564
1491	87		12		0.992554
1783	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain