SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3583

Length: 1793 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3583 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5286	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	PIN-like auxin efflux carrier n=1 Tax=Picea abies RepID=B5TXD0_PICAB	-	-	63%
FL-Next	tr=PIN-like auxin efflux carrier; Picea abies (Norway spruce) (Picea excelsa).	-	-	68%
Blast2go	auxin efflux carrier	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Mpp10 protein	IPR007151	-	-
Sma3	Auxin efflux carrier, plant type	IPR014024	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B5TXD0

Fln msg: Overlapping hits, possible frame ERROR between 150 and 132, your sequence is shorter than subject: 518 - 699

Fln protein: LSLDGREPIQTDAQVGEDGKLHVTVRKSTSCLSVLSSHRSQGRxxxxxxxxNLSNAEIYSNPTPRGSSFNHADFYSLFTNRAAAAAAMSPRASNFGLSDVYSLHSSRGPTPRNSNFDEENFKDINNKLMIQNANNANSPRFGPRPLYSPYGPRSQGSTANAFELNPGVSVQGSVSSYPTPSPTHGVLSPNVSKTGKKTLGDNPRHYQQRMMATDDNKELHMFVWSSSASPVSEANHHHVFAHGSDIIAPDNNHNSNSHVKDIRMLNSSPLTAQTLNGTKGLHEARDTYEDYFRQEFSFGNRGMSPQEEIHSKEVPPPPLCLSKFGSSSSTAELHPKRQHEPRFASMPPASVMTRLILIMVWRKLIRNPNTYSSLVGLIWALVSYRWVLQCQESWRINTNFV*CWSRYGHVQSGPVYGIATTHYSLWEFYCNICNGCEVSYWASCNGCSFYCCWPSRSFSSCRYCAGSTPSRHCSLCVC*RVQCTSRYT*HSSDIWHADCITNNSCVLHSSWSLKQMG*

Protein Length: 519

Fln nts: CTGTCATTGGATGGCAGAGAACCGATTCAGACGGACGCGCAAGTCGGAGAGGACGGGAAGCTTCATGTTACAGTCAGAAAATCCACTTCTTGTCTCTCTGTTTTGTCGTCTCATAGATCTCAGGGGCGCxxxxxxxxxxxxxxxxxxxxxxxxAATTTAAGCAATGCAGAGATCTATTCAAACCCAACACCCAGAGGCTCCAGTTTTAATCATGCTGATTTCTATTCCCTGTTCACCAACAGAGCAGCAGCAGCAGCAGCAATGAGCCCTCGCGCATCCAATTTCGGCCTTTCAGATGTCTATTCACTCCATTCCTCCCGGGGTCCTACACCCAGAAATTCGAATTTCGATGAAGAAAATTTCAAGGACATAAATAACAAGCTTATGATCCAGAATGCCAACAATGCCAACTCCCCTCGATTCGGACCTCGGCCCCTGTATTCCCCATATGGGCCGAGAAGCCAGGGGAGCACAGCGAATGCATTTGAGCTGAACCCAGGTGTTAGTGTTCAGGGAAGTGTGAGTTCTTATCCCACTCCTAGTCCAACTCATGGTGTGTTATCTCCAAATGTATCAAAAACAGGGAAGAAGACTCTGGGTGATAATCCAAGGCACTATCAGCAGAGAATGATGGCAACGGATGATAACAAGGAGCTTCATATGTTTGTATGGAGTTCTAGCGCATCCCCTGTATCAGAAGCAAATCACCACCATGTATTCGCTCATGGCTCAGATATTATAGCTCCTGACAACAACCATAACAGTAATTCCCATGTCAAGGATATACGGATGTTGAATTCTTCCCCACTCACTGCACAGACACTCAATGGGACCAAAGGTTTGCATGAGGCTCGAGACACATACGAAGACTATTTCCGTCAGGAGTTCAGTTTTGGGAACAGGGGAATGTCCCCACAAGAAGAAATACACTCTAAGGAAGTTCCTCCTCCCCCTCTCTGTCTCTCCAAATTTGGTAGTTCCAGTTCAACGGCAGAGCTGCATCCCAAGCGCCAGCATGAACCGAGATTTGCAAGTATGCCTCCTGCTAGTGTCATGACCAGACTTATTCTTATCATGGTGTGGAGGAAACTCATCCGCAATCCTAATACCTATTCCAGCCTTGTAGGTCTCATATGGGCACTCGTCTCCTACAGATGGGTATTGCAATGCCAAGAATCATGGAGGATCAATACGAATTTTGTCTGATGCTGGTCTCGGTATGGCCATGTTCAGTCTGGGCCTGTTTATGGCATTGCAACCACGCATTATAGCCTGTGGGAATTCTATTGCAACATTTGCAATGGCTGTGAGGTTTCTTACTGGGCCAGCTGTAATGGCTGCAGCTTCTATTGCTGTTGGCCTTCGAGGAGTTTTTCTTCATGTCGCTATTGTGCAGGCAGCACTCCCTCAAGGCATTGTTCCCTTTGTGTTTGCTAAAGAGTACAATGTACATCCAGATATACTTAGCACAGCAGTGATATTTGGCATGCTGATTGCATTACCAATAACTCTTGTGTATTACATTCTTCTTGGAGTTTGAAGCAAATGGGCTAG___TGACCAGAGTGAACTACAAGAGCTTTCTTCATGCCACTCAAAATTCTTTTCAATCGGAAGTCTTCTAATACGCAGCACTAGGACTTCAATCATGAACCAGAATTTCCAAGGACCGACTGCATTCACTGGCCACAGCAGAAATCTGTTTGGTGCATGTCTTTCTGGAAGGCTTTTACTGTGTATTCTATTTTAGATTTTCCAATGTCTGCATTCGTTTCTCCAGAGAGGCTTGTTAATCCA

Fln Alignment:

Contig3583___LSLDGREPIQTDAQVGEDGKLHVTVRKSTSCLSVLSSHRSQGR*ASLPxxTPRPSNLSNAEIYS-NPTPRGSSFNHADFYSLFTNRXXXXXAMSPRASNFGLSDVYSLHSSRGPTPRNSNFDEENFKD----INNKLMIQNANNANSPRFGPRPLYSP-----YGPRSQGSTANAFELNPGVSVQGSVSSYPTPSPTHGVLSPNVSK---TGKKTLGDNPRHYQQRMMATDDNKELHMFVWSSSASPVSEANHHHVFAHGSDIIAPDNNHNSNSHVKDIRMLNSSPLTAQTLNG--TKGLHEAR---DTYEDYFRQEFSFGNRGMSPQEEIHSKEVPPPPLCLSKFGSSSSTAELHPKRQHEPRFASMPPASVMTRLILIMVWRKLIRNPNTYSSLVGLIWALVSYRW
B5TXD0_________________VSLDGRELLQTDAEIGDDGKLHVTVRKSTSSRSVISSRRSMGL-GSLPxxTPRPSNLTGAEIYSLNPTPRGSNFNHSDFYSMMAGRG-----MSPRQSNFGPSDAYSLQSSRGPTPRPSNFDDENTRDFKSGINNNPVAPANAMMNSPRFGP-PLYPPGHMHPYAHRPQQQQPQP-GLEPASNAANNVAGYPAPNPD--VLSTNSSSRPPAAKRNMASDPIRSPQQAKGQHDAKELHMFVWSSSASPVSEGGLH-VFG-GAEFADPGRTAATDHNAKEIRML-VSPTADHATNGGVAKGLPELRHDQQPYEEYAREDFSFGNRAMSQGNESIPLDKEGPSL--SKFGSSS-TAELHPK-SHDEKHKQMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVSFRW

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
486		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1534	1552	TGC TGC TGC TGC TGC TGC T	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain