SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3565

Length: 1083 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3565

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8031	19/23
SustainPine v2.0	sp_v2.0_unigene63527	4/23

Source	Descriptions	Term	Type	Identity
AutoFact	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative [Oryza sativa Japonica Group] gb\|ABA92375.1\| RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] gb\|EEE51928.1\| hypothetical protein OsJ_33542 [Oryza sativa Japoni	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	rna recognition motif-containing protein	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	64%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVU4

Fln msg: Overlapping hits, possible frame ERROR between 465 and 441, your sequence is shorter than subject: 298 - 506

Fln protein: LGNIPSNLKEEELTKIVSEQGPGFQHLELIKDPKDSTRNRGFAFVEYYNKGCAEKAMKNMTHSKFTLDDKVITVKWATSQRSSSEEVKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAIKAIxxxxxxxxxxRELAVSLARPLSDKKPQNMGNPTPFQRPLFSNYQPQAGYGYNPNMYGFGSMGYTQPVIYGRGPAPEGMTMVPMILPDGRIGYVLQQPGNGVGGSAAYRAEGSGSYGGGSASYRSTRNSSGSGRQSGGRNSGGGGSRRYRPY*

Protein Length: 299

Fln nts: CTGGGTAATATACCATCAAATTTGAAAGAAGAGGAGCTTACAAAAATAGTCTCTGAGCAAGGTCCTGGATTTCAACATTTGGAGTTAATAAAGGATCCAAAAGATTCAACAAGGAATCGTGGTTTTGCCTTTGTTGAGTATTACAATAAAGGTTGTGCTGAAAAGGCAATGAAAAACATGACACACTCAAAATTCACCTTGGATGACAAGGTCATAACAGTTAAATGGGCAACTAGTCAGCGTAGCTCATCAGAGGAGGTCAAGTCTGTTTATGTGCGTAATTTGCCCGAGAATGTGACAGAAGAGCAACTAAGAGAACTTTTTGGTCGACATGGTGAAGTTACTAAAGTTGTCCTGTTGGAACAAAAGCCTGGGCAGCCAAAACGTGATTTTGGCTTTGTTCACTATGCTGACCATTCGAGTGCCATAAAGGCTATTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGGGAGCTCGCAGTATCTTTAGCAAGACCTTTGAGTGATAAGAAGCCCCAAAATATGGGAAACCCTACTCCTTTTCAGAGGCCTCTGTTTTCAAATTATCAACCTCAAGCTGGATATGGTTACAATCCAAACATGTATGGATTTGGCTCCATGGGCTATACTCAGCCTGTTATCTATGGTAGAGGCCCGGCACCTGAAGGCATGACAATGGTACCCATGATACTTCCAGATGGGCGTATCGGATATGTATTACAACAACCAGGGAATGGGGTAGGAGGGTCTGCCGCATACAGAGCAGAAGGGTCTGGTTCTTACGGTGGAGGGTCTGCATCGTATAGGTCAACTAGAAATAGTTCAGGCAGTGGTAGGCAAAGTGGTGGAAGGAATTCTGGCGGTGGCGGCAGTCGGCGCTATCGACCCTATTAGTGTTTTGTCAAATATGTTTAACTACCAGGGGACAATGATAGGTTTAGATCACCTTTGTGGCAGGTGTTTAACATTGTCTTTATTTTTTATGGCGATCTTTGTAGCTGGATGGTCAAGAATACCATCATTTTCAATTTTGCTATAATGGATTTGGTTATCCCACCGGATCTTCATAGACTTCCCAGCATCT

Fln Alignment:

Contig3565___LGNIPSNLKEEELTKIVSEQGPGFQHLELIKDPKDSTRNRGFAFVEYYNKGCAEKAMKNMTHSKFTLDDKVITVKWATSQRSSSEEVKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAIKAIExxxxxxxxDRELAVSLARPLSDKKPQNMGNPTPFQRPLFSNYQPQAGYGYNPNMYGFGSMGYTQPVIYGRGPAPEGMTMVPMILPDGRIGYVLQQPGNGV
A9NVU4_________________LGNIPSNLKEEELTKIVSEQGPGYQHLELIKDPKDTTRNRGFAFVEYYNKGCAEKAMKNMTHSKFQLDDKLITVKWATSQRSSSEEVKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAMKAIExxxxxxxxDRELSVSLARPLSDKKPQNMGNPTSFQRPLFSNFQPQAGYGYNPNMYGFGSMGYTQPVIYGRGPTPEGMTMVPMILPDGRVGYVLQQPGNAV

SNPs (tot: 8)

Position	A %	G %	T %	Probability
133	25	75		0.996473
135		25	75	0.996473
137	75	25		0.996473
208	75	25		0.996473
632		22	77	0.999999
650	25		75	1.0
942	80		20	0.995493
969	75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain