SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3558

Length: 361 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3558
ATGGGGAGTCTGGGTTGCATCGAGCGTCTTTTCTGCATATCCTCTCTGTCTTCTCTGGATTTAAGTAGCCCTCTCTCCGAATATCCTCCAGGAACTACTATTTGCAGTGTGAAGAATGGGGCACAGAAGCCCGAGTTATAGCCCTCCGCCGAGGAGAGGATATTACCGTAGAAGAAGCCCTAGCCCGAGTCCTAGAGGTCGTTACGGCGGGCGGCCGAGGGCCGGTCCTACAAGCCTATTGGTTCGCAATCTTCGGCTGGATTGCAGGCCGGATGACCTTCGAGGCCCATTTAGGGAGTTTGGACGCATCAAAGACATTTATCTCCCAAGAGACTTTCATACAGGAGAGCCTCGTGGTTTT

Ace file of the UniGene biog2_v2.0_unigene3558 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3701	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os03g0374575 protein n=4 Tax=Oryza sativa RepID=C7J0R1_ORYSJ	-	-	4.0e-39	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	splicing arginine serine-rich 4	-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	83%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	83%
Blast2go	plastid	GO:0009536	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Protamine P1	IPR000221	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPS4

Fln msg: Distance to subject end: 196 aas, your sequence is shorter than subject: 82 - 275

Fln protein: MGHRSPSYSPPPRRGYYRRRSPSPSPRGRYGGRPRAGPTSLLVRNLRLDCRPDDLRGPFREFGRIKDIYLPRDFHTGEPRGF

Protein Length: 83

Fln nts: ATGGGGAGTCTGGGTTGCATCGAGCGTCTTTTCTGCATATCCTCTCTGTCTTCTCTGGATTTAAGTAGCCCTCTCTCCGAATATCCTCCAGGAACTACTATTTGCAGTGTGAAGA_-_ATGGGGCACAGAAGCCCGAGTTATAGCCCTCCGCCGAGGAGAGGATATTACCGTAGAAGAAGCCCTAGCCCGAGTCCTAGAGGTCGTTACGGCGGGCGGCCGAGGGCCGGTCCTACAAGCCTATTGGTTCGCAATCTTCGGCTGGATTGCAGGCCGGATGACCTTCGAGGCCCATTTAGGGAGTTTGGACGCATCAAAGACATTTATCTCCCAAGAGACTTTCATACAGGAGAGCCTCGTGGTTTT

Fln Alignment:

Contig3558___TSLLVRNLRLDCRPDDLRGPFREFGRIKDIYLPRDFHTGEPRGF
A9NPS4_________________TSLLVRNIPRDCRSDELRMPFERFGPLKDVYLPKDFYTGEPRGF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
206		20		80	0.995493
210	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain