SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3495

Length: 348 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3495
CAGGTTCTTAGGCGAAAGCCAGTATAGGGTTATGATATTAGCTTTTTGATCACGAACTATCATTGTGAAGAAATGTATAAGCACAAGCTCATAGACTTCATTGTCCAATTTATGGAGGATATTGATAAAGAGATAAGCGAGCTGAAACTTTCCGTGAACACTCGTGGACGGCTTGTAGCAAAAGAATTTTTGAAACAGTTCACCTAAATATTTCAATACTCAGTTCTCTGGTCTTACATATTGTATACATGGTCTTCCGTATTGTGTTTTGGCATGAGCAGTAACACTTATTTCATTAATGATACATGTGATGTCATTTCTGAGAGCAGTTTGACGTTTGTAAAAGAA

Ace file of the UniGene biog2_v2.0_unigene3495 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15332	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	putative ARP2/3 complex 20 kDa subunit, 3'-partial [Oryza sativa Japonica Group]	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	actin-related protein 2 3 complex subunit 4-like	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	cell morphogenesis	GO:0000902	Biological Process	95%
Blast2go	actin nucleation	GO:0045010	Biological Process	95%
Blast2go	protein binding	GO:0005515	Molecular Function	95%
Blast2go	Arp2/3 protein complex	GO:0005885	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	ARP23 complex 20kDa subunit	IPR008384	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADE5

Fln msg: your sequence is shorter than subject: 69 - 169

Fln protein: QVLRRKPV*GYDISFLITNYHCEEMYKHKLIDFIVQFMEDIDKEISELKLSVNTRGRLVAKEFLKQFT*

Protein Length: 70

Fln nts: CAGGTTCTTAGGCGAAAGCCAGTATAGGGTTATGATATTAGCTTTTTGATCACGAACTATCATTGTGAAGAAATGTATAAGCACAAGCTCATAGACTTCATTGTCCAATTTATGGAGGATATTGATAAAGAGATAAGCGAGCTGAAACTTTCCGTGAACACTCGTGGACGGCTTGTAGCAAAAGAATTTTTGAAACAGTTCACCTAA___ATATTTCAATACTCAGTTCTCTGGTCTTACATATTGTATACATGGTCTTCCGTATTGTGTTTTGGCATGAGCAGTAACACTTATTTCATTAATGATACATGTGATGTCATTTCTGAGAGCAGTTTGACGTTTGTAAAAGAA

Fln Alignment:

Contig3495___QVLRRKPV*GYDISFLITNYHCEEMYKHKLIDFIVQFMEDIDKEISELKLSVNTRGRLVAKEFLKQFT
D5ADE5_________________QVLRRKPVQGYDISFLITNYHCEEMYKHKLIDFIVQFMEDIDKEISELKLSVNTRGRLVAKEFLKQFT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain