SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3493

Length: 510 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3493
ATGGGCTCTCTGCTTCCCATGATGGCTCTATAAGGTTATGGGCACTCTCAGGAGAGTCATTAGTGGAGATGGTTGGACATACTTCTCTTGTTTATTCTGTAGCTGCGCATTCTTCAGGAGTTATTGCATCTGGTAGTGAAGACCGCTACACAAAGTTGTGGAGAGATGCAACATGCATTCAAAGCATTGAGCATCCTGGCTGTGTGTGGGATGTAAAATTCTTGCCAAATGGAGATCTTGTTACTGCGTGTTCTGATGGAGTTGTAAGGATATGGACAACAGATGCGGATAGAATGGCAGGAACACCTGAATTAGATGCCTTTGAGGCACAACTTTCTTTCTACAAGTCCAACACGAAAACGGTGGGAGGCATAAAAGTATCTGAGTTGCCCGGGTTGGAGGCTCTCCAGCAGCCTGGAACAAAGAATGGGCAAACGAAAGTCATTCGTGAAGGCGATACTGGAGTTGCTTATTCTTGGAATTCAACAGAGTACAAATGGATAAAATTGG

Ace file of the UniGene biog2_v2.0_unigene3493 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene213	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	phospholipase A-2-activating protein [Arabidopsis thaliana] gb\|AAK95297.1\|AF410311_1 AT3g18860/MCB22_3 [Arabidopsis thaliana] dbj\|BAB03095.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE76160.1\| phospholipase A-2-activating protein [Arabidopsis t	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	phospholipase a-2-activating protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	PUL	IPR013535	-	-
Sma3	PLAA family ubiquitin binding, PFU	IPR015155	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX55

Fln msg: Distance to subject end: 114 aas, your sequence is shorter than subject: 169 - 322

Fln protein: GLSASHDGSIRLWALSGESLVEMVGHTSLVYSVAAHSSGVIASGSEDRYTKLWRDATCIQSIEHPGCVWDVKFLPNGDLVTACSDGVVRIWTTDADRMAGTPELDAFEAQLSFYKSNTKTVGGIKVSELPGLEALQQPGTKNGQTKVIREGDTGVAYSWNSTEYKWIKL

Protein Length: 170

Fln nts: ATGGGCTCTCTGCTTCCCATGATGGCTCTATAAGGTTATGGGCACTCTCAGGAGAGTCATTAGTGGAGATGGTTGGACATACTTCTCTTGTTTATTCTGTAGCTGCGCATTCTTCAGGAGTTATTGCATCTGGTAGTGAAGACCGCTACACAAAGTTGTGGAGAGATGCAACATGCATTCAAAGCATTGAGCATCCTGGCTGTGTGTGGGATGTAAAATTCTTGCCAAATGGAGATCTTGTTACTGCGTGTTCTGATGGAGTTGTAAGGATATGGACAACAGATGCGGATAGAATGGCAGGAACACCTGAATTAGATGCCTTTGAGGCACAACTTTCTTTCTACAAGTCCAACACGAAAACGGTGGGAGGCATAAAAGTATCTGAGTTGCCCGGGTTGGAGGCTCTCCAGCAGCCTGGAACAAAGAATGGGCAAACGAAAGTCATTCGTGAAGGCGATACTGGAGTTGCTTATTCTTGGAATTCAACAGAGTACAAATGGATAAAATTGG

Fln Alignment:

Contig3493___LSASHDGSIRLWALSGESLVEMV---GHTSLVYSVAAHSS-GVIASGSEDRYTKLWRDAT--CIQSIEHPGC-VWDVKFLPNGDLVTACSDG--VVRIWTTDADR
A9NX55_________________LSGSLDESVKIW--SGDELEEEATNTGHSLGVVAVAAHPTVAIAASTSLDSFVRVFDVDTNVTVSTLESPPSEAWNMRFHPKGDMLAVAGGGSATVKLWDTTSWR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
385		75		25	0.996473
390	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain