SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3468

Length: 1315 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3468 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4226	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	protein	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ26

Fln msg: your sequence is shorter than subject: 326 - 344

Fln protein: IKVAWAQPSNDPDEDVMAQVKSVFVNILPPTWNEEHVKEHFGKFGEIERVVLSCNMQSAKRKDFAFVNYTTREAAIACIEAFSKDDELIDGDSKVKVKVSLAKPAHKGKTRKVKSKGTNKGDLKGGNKGVSQGHVIAKYSLNTTAGAVALEKGGQPTLPSATLPSATLPSATLPSTTHEILHILRQQAALGQGHVSVSGGHVGGLQQAPMVQNLQSMASVQGYGHTLPGVKRPHTALGDISVNSRGNPRARLESTTAAGGLSYGLSAGGQGSFPILYFRSIYRTILSPSKYWRCTLCYRFCKLCPYWISGGICTWWSWWWCQLLW*

Protein Length: 327

Fln nts: ATTAAGGTTGCTTGGGCCCAGCCTTCGAATGATCCTGATGAAGATGTAATGGCACAGGTAAAGTCAGTGTTTGTAAATATCTTGCCTCCTACATGGAATGAGGAACATGTTAAAGAACACTTTGGCAAATTTGGTGAGATAGAAAGGGTTGTTCTTTCATGCAATATGCAATCTGCGAAGAGAAAAGACTTTGCGTTTGTGAACTATACTACTCGAGAAGCTGCTATTGCATGTATCGAGGCATTCAGCAAGGATGATGAGCTGATTGATGGAGATTCAAAGGTGAAAGTGAAGGTGTCACTAGCCAAACCTGCACATAAGGGAAAAACTAGAAAAGTAAAGTCAAAAGGAACAAATAAAGGAGATCTAAAGGGAGGGAACAAAGGTGTTTCTCAAGGTCATGTCATTGCAAAATATTCCTTGAACACAACAGCTGGTGCCGTAGCCCTTGAAAAGGGTGGCCAACCAACACTCCCTTCAGCAACGCTCCCTTCAGCAACTCTACCTTCAGCGACTCTACCTTCAACAACTCATGAAATTCTACATATTTTAAGACAACAAGCAGCATTGGGACAAGGACATGTATCTGTTAGTGGAGGTCATGTTGGAGGGCTTCAACAAGCACCTATGGTTCAAAACCTACAATCCATGGCTTCTGTTCAAGGGTATGGCCACACCTTACCAGGAGTTAAACGCCCACACACAGCGCTGGGTGACATATCTGTAAACTCGAGAGGTAATCCTCGTGCTCGCTTGGAGAGTACTACTGCAGCTGGAGGCTTAAGCTATGGCTTGTCTGCAGGAGGACAGGGCTCTTTTCCAATCCTATATTTCAGGAGCATCTACAGAACAATTTTATCACCGTCCAAGTATTGGAGGTGTACCTTATGCTACAGGTTCTGTAAGTTATGCCCCTATTGGATTTCAGGGGGCATATGCACATGGTGGTCGTGGTGGTGGTGCCAACTCCTATGGTAA___ACGTTGATATGCCAGGCATCATTTCTGGCCATAACCCTGACCTGGAGATAGGTTTCCATATTGGTTGTGGGTAAAGACATTATAGATATGCTGCTCAACAAAATAATCTCAAGCTTTTGCTTCACAAATTTTGAAAATCCTCGAGTTTTGGGCACTCTTCTACCTTGGCTCATTATAACGAGTGCAGAACTTAATTTTATCAGACTCCTTTCAGCAAACTCATTTTCTTTTCAACGATGAAATCGGAAAGGAGAACTTTCATTGCTTATTGGGCACTTTATCAAGGGGGATTGCGATGTAAATTATAAGTTTTAAGCTTTCTGGGCTTGATGCAAAC

Fln Alignment:

Contig3468___AQPSNDPDEDVMAQVKSVFVNILPPTWNEEHVKEHFGKFGEIERVVLSCNMQSAKRKDFAFVNYTTREAAIACIEAFSKDDELIDGDSKVKVKVSLAKPAHKGKTRKVKSKGTNKGDLKGGNKGVSQGHVIAKYSLNTTAGAVA----LEKGGQPTLPSATLPSATLPSATLPSTTHEILHILRQQAAXXXXXXXXXXXXXXXXXQAPMVQNLQSMASVQGYGHTLPGVKRPHTALGDISVNSRGNPRARLEST
B8LQ26_________________AQPLNDPDEDVMEQVKSVFVDGLQPTWNEEKVKEHFGKFGEIERVVLACNIQSAKRKDFGFVNYTTREAAIACIEAFSKDDELIDGDSKVKVKVSLAKPSHKGKLRKGKSKGTNKGDLKGGSKGVSQGHVLKKHSSSTTAGAVVDKGLLGKGGQPTLPSA---------------THEILHILRQQAAWGQGHAAVSGVSVGGLQQVSLVPHIQSMSTVQGYGHALPGVKRPHPALDGISVNSRGNPRARLEST

SNPs (tot: 4)

Position	A %	G %	T %	Probability
546		80	20	0.995493
614	25		75	0.996473
1237	66	33		0.997452
1271	33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
354	365	CAC CAC CAC CAC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain