SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3462

Length: 491 nt

UniGene Fasta

>biog2_v2.0_unigene3462
ATGGGGAAAGAAGAAAGGAATAAAACAAAGGGAAGCCCTGGTGAGCGGCCGCGTGTATGGTTTCAATCCTTCCCGTGCGGAGGAGGGATCGATTCCACGACATTCAAGGAAGACAGAGAGGGCAGGCGAGAGTGGAGGAGGAGGTGGGGGCGATTTTTGAAGCCGCCGACGTTGGGTGGACGGGGGTGTATGTGCTTTTTAGGGTTGAGGGTTTTAGGGGCGAGTGAGTGAGGTTGTTTGGACTGGAATTGCAATTACAACTGTAATGGCTTCCGATGATGTAGTGGGAGGGAGCAACGCAGTCGCATTCCGCCAAACTCCTCCGCTCTATGCAGAAAGCAAAGAGGCCGCTGTCTCCACGTTAGTGAATCTAGCCGAGGAAGCAAAGTTAGCGAGCGAAGGCGTGAAGGCACCTGGACATGCTGTTCTTACTGTCTGTAAATCACTATTTGCTGGTGGCGTAGCAGGTGGAGTGTCTCGTACAGCTGTAG

Ace file of the UniGene biog2_v2.0_unigene3462

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6170	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	adenine nucleotide transporter 1 [Arabidopsis thaliana] gb\|AAK25878.1\|AF360168_1 putative carrier protein [Arabidopsis thaliana] gb\|AAL06538.1\|AF412085_1 AT4g01100/F2N1_16 [Arabidopsis thaliana] gb\|AAB61037.1\| similar to mitochondrial carrier family [Arab	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	grave disease carrier	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	aerobic respiration	GO:0009060	Biological Process	91%
Blast2go	AMP transport	GO:0080121	Biological Process	91%
Blast2go	ADP transport	GO:0015866	Biological Process	91%
Blast2go	mitochondrial transport	GO:0006839	Biological Process	91%
Blast2go	ATP transport	GO:0015867	Biological Process	91%
Blast2go	AMP transmembrane transporter activity	GO:0080122	Molecular Function	91%
Blast2go	binding	GO:0005488	Molecular Function	91%
Blast2go	ATP transmembrane transporter activity	GO:0005347	Molecular Function	91%
Blast2go	ADP transmembrane transporter activity	GO:0015217	Molecular Function	91%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	91%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	91%
Blast2go	integral to membrane	GO:0016021	Cellular Component	91%
Blast2go	plastid	GO:0009536	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADX1

Fln msg: Distance to subject end: 296 aas, your sequence is shorter than subject: 75 - 371

Fln protein: MASDDVVGGSNAVAFRQTPPLYAESKEAAVSTLVNLAEEAKLASEGVKAPGHAVLTVCKSLFAGGVAGGVSRTAV

Protein Length: 76

Fln nts: ATGGGGAAAGAAGAAAGGAATAAAACAAAGGGAAGCCCTGGTGAGCGGCCGCGTGTATGGTTTCAATCCTTCCCGTGCGGAGGAGGGATCGATTCCACGACATTCAAGGAAGACAGAGAGGGCAGGCGAGAGTGGAGGAGGAGGTGGGGGCGATTTTTGAAGCCGCCGACGTTGGGTGGACGGGGGTGTATGTGCTTTTTAGGGTTGAGGGTTTTAGGGGCGAGTGAGTGAGGTTGTTTGGACTGGAATTGCAATTACAACTGTA_-_ATGGCTTCCGATGATGTAGTGGGAGGGAGCAACGCAGTCGCATTCCGCCAAACTCCTCCGCTCTATGCAGAAAGCAAAGAGGCCGCTGTCTCCACGTTAGTGAATCTAGCCGAGGAAGCAAAGTTAGCGAGCGAAGGCGTGAAGGCACCTGGACATGCTGTTCTTACTGTCTGTAAATCACTATTTGCTGGTGGCGTAGCAGGTGGAGTGTCTCGTACAGCTGTAG

Fln Alignment:

Contig3462___MASDDVVGGSNAVAFRQTPPLYAESKEAAVSTLVNLAEEAKLASEGVKAPGHAVLTVCKSLFAGGVAGGVSRTAV
D5ADX1_________________MASDDVVGGSNTVAFRQTPPLYAESKEAAVSTFVNLAEEAKLASEGVKAPGHAVLTICKSLFAGGVAGGVSRSAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain