SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3457

Length: 1242 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3457 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17601	2/25
SustainPine v2.0	sp_v2.0_unigene21081	19/25
SustainPine v2.0	sp_v2.0_unigene61335	4/25

Source	Descriptions	Term	Type	Identity
AutoFact	protein transport SEC13-like protein [Solanum tuberosum]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein sec13 homolog	-	-	87%

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQI2

Fln msg: Distance to subject end: 67 aas, your sequence is shorter than subject: 255 - 322

Fln protein: MSSGVKQTGSQKFESGHQDVVHDVTMDYYGKRIATCSADRTIKLFGMNTSDTPTLLASLTGHEGPVWQVAWAHPKFGSMLASCSYDRRVIIWREGQQENEWSQVQVFKEHEASVNSISWAPHELGLCLACGSSDGSITVFTGREDGSWDKTKIDQAHQVGVTAVSWAPASAPGSLVGQPSDPVQKLVSGGCDNTAKVWKFYNGSWKLDCFPPLQMHTDWVRDVAWAPNLGLPKSTIASCSQDGRVVIWTQGKEGD

Protein Length: 256

Fln nts: ATGGGGACCAAATATAATTTTAGTTTTAGATCATCTATGCTGCGCATCTCATTCCATCTTCTCAGCAAGGATACAGGCCTCGACCAAATATAATTTTAGTTTTGGACCATCTATACTGCGCATCTCATTCGATCTTCTCAATAAGGATACAAGGATACAGGCCGACGATGGACGGTTGAATAGATAAATTTCTACAGCTCGAAATCATCTGCTTGTTTCTCCTGCGAGCTTGCCTCTTTTTGATCCACCTCAGCTGTGCCAGAGAAAAACACGAGATCCGTGACAAGGGAAGGGCGGCAATTGCAAACTGGATCGAATTTTACTGCCGAAGCTGCTTTCTTCCAGATTTGCGGATAAGGTTCTAGGGCTTCCATCGCTTGGCAAATACGAAGTGGCTTGGTCTTCCAGTTTGTTCCTTCTCCTCGGGCTGGCAGAAGAAGAAGGGCGACAACAAATATACAGAACTCATCGATCAAT_-_ATGTCTTCAGGAGTGAAGCAAACGGGGAGTCAGAAGTTCGAATCCGGCCACCAAGATGTTGTCCATGACGTCACAATGGATTACTACGGGAAAAGGATAGCGACGTGCTCCGCAGATCGGACCATAAAGCTTTTCGGTATGAACACCTCAGATACCCCAACCCTTCTGGCCTCGCTTACTGGTCATGAAGGCCCTGTCTGGCAGGTTGCCTGGGCTCACCCAAAGTTCGGATCCATGCTTGCTTCCTGCTCGTATGATCGGCGCGTAATCATCTGGCGAGAGGGTCAGCAGGAGAACGAATGGTCGCAGGTTCAAGTCTTCAAAGAGCACGAGGCCTCCGTGAATTCGATCTCGTGGGCACCCCACGAACTGGGACTCTGCCTGGCCTGCGGTTCTTCTGACGGCTCCATAACCGTCTTCACAGGCCGCGAGGATGGATCCTGGGACAAAACGAAGATAGATCAAGCTCACCAGGTGGGCGTGACGGCGGTTTCATGGGCGCCCGCTTCCGCTCCCGGTTCCCTTGTGGGTCAGCCCTCAGATCCCGTTCAGAAGCTTGTGTCTGGTGGGTGTGATAACACAGCTAAAGTTTGGAAATTTTACAATGGTTCCTGGAAGCTAGATTGTTTTCCTCCTCTACAAATGCATACGGATTGGGTTCGGGATGTAGCTTGGGCACCCAATTTAGGTCTTCCCAAGAGCACTATCGCTAGTTGTTCCCAGGATGGGAGGGTTGTTATATGGACACAGGGTAAAGAAGGGGAT

Fln Alignment:

Contig3457___MSSGVKQTGSQKFESGHQDVVHDVTMDYYGKRIATCSADRTIKLFGMNTSDTPTLLASLTGHEGPVWQVAWAHPKFGSMLASCSYDRRVIIWREGQQENEWSQVQVFKEHEASVNSISWAPHELGLCLACGSSDGSITVFTGREDGSWDKTKIDQAHQVGVTAVSWAPASAPGSLVGQPSDPVQKLVSGGCDNTAKVWKFYNGSWKLDCFPPLQMHTDWVRDVAWAPNLGLPKSTIASCSQDGRVVIWTQGKEGD
A9NQI2_________________MSSGVKQMGSQKFESGHQDVVHDVTMDYYGKRIATCSADRTIKLFGLNASDTPTLLASLTGHEGPVWQVAWAHPKFGSILASCSYDRRVIIWQEGQQENAWSQLQVFKEHEASVNSVSWAPHELGLCLACGSSDGSITVFTRREDESWDKTKIDQAHQVGVTAVSWAPASAPGSLVGQPSDPIQKLVSGGCDNTAKVWKFYNGSWKLDCFPPLQMHTDWVRDVAWAPNLGLPKSTIASCSQDGKVAIWTQGKEGD

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
987	60	40			1.0
1127	66	33			0.997452
1128		33	66		0.997452
1129		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain