SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3455

Length: 1138 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3455

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17860	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	nucleotide-sugar transporter-like protein [Arabidopsis thaliana] gb\|AAG12540.1\|AC015446_21 Unknown protein [Arabidopsis thaliana] gb\|AAG12852.1\|AC079286_9 unknown protein; 21747-23353 [Arabidopsis thaliana] gb\|ACF20469.1\| At1g34020 [Arabidopsis thaliana]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	udp-galactose transporter 2-like	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF250	IPR004853	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX31

Fln msg: Distance to subject end: 109 aas, your sequence is shorter than subject: 246 - 352

Fln protein: MAPASKADRKAALDVAAWMFNVSTSVGIIMVNKGLMARYGFTFATTLTGLHFAMTTLMAIILRCMGYIQPSHLPFSELAKFVICANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFFEVLFDKIRYSRDTKLSILVVLVGVAICTVTDVSVNTKGFVAAAIAVWSTSMQQYYVHYLQKKYALGSFDLLGHTAPLQAATLLILGPFLDYWLAEKRVDLYDYSITSVLFITLSCVIAVGTNLSQFIC

Protein Length: 247

Fln nts: CATATAGCCTAAGTACAGCCATCGTCTCCTTCCATTTTGGGGGTCCTCTCGACTGTCCACGAGAGCCCAACTAGCGATCCTGCCTTCCAGGAGCCTTTACAGGGAGTAAAGGGATCTGTTTCCTCTGTGTTGCTCAATTCTATAATTTCGAGGAGCGTCGAGTGACTTGGGTCTCTGGTTTTGGGGATTGGTGATGTGGGTTTCTCTTTGTTTTGTACATTAGTTGCTCTGCTCGTTGGTATGCTGAGGATCTGCGGTGCTTGAGGTCATTTGTATGATTTTTGTGCACCATAGGGCACTTGGACACTTCGAGCTTTGGGGATTCAAGATCCAGATCTGATAGCGTAAATTGATGGGCTGGAAGTGATTGGATCTGTGTGTAATTTAGAGTTGGTAGGC_-_ATGGCACCTGCAAGCAAGGCAGACAGGAAGGCGGCCCTTGATGTGGCAGCATGGATGTTCAATGTCAGCACATCTGTTGGGATTATTATGGTTAACAAAGGTCTGATGGCTAGATATGGCTTCACTTTTGCTACTACATTGACAGGCTTACATTTTGCAATGACCACACTGATGGCAATTATTCTTCGCTGTATGGGTTATATCCAACCTTCCCATTTACCTTTCTCCGAGCTTGCGAAATTTGTGATCTGTGCCAATTTTTCCATTGTTGGCATGAATGTCAGTCTCATGTGGAATTCTGTTGGTTTTTACCAGATAGCAAAGTTGAGCATGATACCTGTATCTTGCTTTTTTGAAGTTCTCTTTGACAAGATTCGTTATTCAAGAGATACCAAGTTAAGTATACTAGTAGTGCTAGTTGGTGTAGCAATATGTACTGTCACAGATGTCAGTGTCAATACTAAAGGTTTTGTAGCTGCTGCGATTGCAGTATGGAGCACTTCTATGCAACAATATTATGTTCACTACCTGCAGAAGAAATACGCACTGGGTTCTTTTGATCTTCTTGGACATACTGCGCCACTGCAAGCAGCTACCTTGCTCATTTTAGGTCCTTTTCTTGATTACTGGCTCGCAGAAAAAAGAGTGGATCTTTATGATTATTCCATAACTTCTGTGCTCTTCATTACACTCTCATGCGTGATCGCAGTTGGCACCAATCTTAGCCAATTCATCTGCA

Fln Alignment:

Contig3455___VAAWMFNVSTSVGIIMVNKGLMARYGFTFATTLTGLHFAMTTLMAIILRCMGYIQPSHLPFSELAK--FVICANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFFEVLFDKIRYSRDTKLSILVVLVGVAICTVTDVSVNTKGFVAAAIAVWSTSMQQYYVHYLQKKYALGSFDLLGHTAPLQAATLLILGPFLDYWLAEKRVDLYDYSITSVLFITLSCVIAVGTNLSQFI
A9NX31_________________VGALSLSVISSVSIVICNKALISTLGFNFATTLTSWHLLVTFCSLHIALWLKLFE--HKPFDARAVMGFGILNGISIGLLNLCLGFNSVGFYQMTKLAIIPCTVLLETLFFKKDFSRKIQFSLVILLLGVGIATVTDLQLNLLGSVLSLLAIVTTCVAQIMTNTIQKRFKVSSTQLLYQSCPYQATTLFITGPFVDGLLTNQNVFAFKYTPHVLIFIVLSCLISVSVNFSTFL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
317		66		33	0.997452
599		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain