SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3445

Length: 186 nt

UniGene Fasta

>biog2_v2.0_unigene3445
ATGGGATGAACACCGTTTAATGTGTACATCTGAACTCTGTACTTCTGTTGAAAGGGATCGGTATGAAAGATCGATCTATAAGGCGCAACGAAATGCTGTACTTTCAGTAAGTGCATGCTTGCTTTATTGGATTATATTTCGTGTTTGCAAGTACTATAATGAGATTCGAAACTTAGAAGAACAAAT

Ace file of the UniGene biog2_v2.0_unigene3445

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23449	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	79%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKQ0

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 61 - 129

Fln protein: WDEHRLMCTSELCTSVERDRYERSIYKAQRNAVLSVSACLLYWIIFRVCKYYNEIRNLEEQ

Protein Length: 62

Fln nts: ATGGGATGAACACCGTTTAATGTGTACATCTGAACTCTGTACTTCTGTTGAAAGGGATCGGTATGAAAGATCGATCTATAAGGCGCAACGAAATGCTGTACTTTCAGTAAGTGCATGCTTGCTTTATTGGATTATATTTCGTGTTTGCAAGTACTATAATGAGATTCGAAACTTAGAAGAACAAAT

Fln Alignment:

Contig3445___DEHRLMCTSELCTSVERDRYERSIYKAQRNAVLSVSACLLYWIIFRVCKYYNEIRNLEEQ
A9NKQ0_________________NEHRLMCTSDACTSVERDRYERSIYKAQRNAVLSVSACLLYWIIFRICKYYNEIQNLEEQ

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
28		60		40	1.0
29	20		40		1.0
30	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain