SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3410

Length: 1410 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3410 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17249	30/33
SustainPine v2.0	sp_v2.0_unigene25072	2/33
SustainPine v2.0	sp_v2.0_unigene77416	1/33

Source	Descriptions	Term	Type	Identity
AutoFact	L-galactose dehydrogenase n=2 Tax=Vitis vinifera RepID=A5JPK6_VITVI	-	-	76%
FL-Next	sp=Probable voltage-gated potassium channel subunit beta; Oryza sativa subsp. japonica (Rice).	-	-	24%
Blast2go	l-galactose dehydrogenase	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	0.0	87%
Blast2go	L-galactose dehydrogenase activity	GO:0010349	Molecular Function	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q40648

Fln msg:

Fln protein: MAAIGVRGVGNTGLEVSSLGFGASPLGNVFGNVKEEDAIASVHEAFRLGINFFDTSPYYGGTLSEKMLGKALKTLMVPRDQYIVSTKCGRYAEGFDFSAERVTQSIDESLARLNLDYVDILQCHDIEFGSLDQIVNETIPALQKLKETGKIRYIGITGLPLHVFTYVLDRVPPGSVDVILSYCHYSINDTSLEDLLPYLKSKGVGVITASPLSMGLLTENGPPEWHPAPSELKSACAAAAAHCKAKGKNISKLSLQYSLKNKDIASVLVGMNSVQQVRENIAATVEVEEGQCIDQELLEEVEAIIRPVKNLTWPSGIVHN*

Protein Length: 322

Fln nts: ATGGGGATTGTGGTCAGAATGGCTTACGCTTTTCTTTCAAAATTGAAAAAAATATTAGCATGCTGAGTGTGAAGCATTTCCGACACGGTGCAGAACAAAATGGGATCATCTCCTGAAATGCATAATCTTTGCACTCGTTCACACATATATACAGTCCTCTTTGTCTTTCAGATCTGAAAATTTTATCGTGTGTAATTA_-_ATGGCAGCTATTGGTGTGAGAGGGGTGGGCAACACTGGACTGGAGGTCAGCTCCTTGGGATTTGGAGCATCTCCCCTCGGAAACGTATTTGGAAATGTGAAAGAAGAAGACGCCATTGCTTCGGTTCATGAAGCTTTTCGTCTGGGAATCAACTTCTTCGACACATCACCTTACTATGGAGGCACTTTATCTGAAAAGATGCTGGGAAAAGCCTTGAAGACTCTAATGGTGCCTAGAGATCAGTATATAGTTTCAACAAAGTGTGGCCGATATGCAGAAGGTTTTGACTTTAGTGCTGAACGAGTAACACAAAGTATAGATGAGAGCTTGGCAAGGTTGAACCTTGACTATGTTGACATTTTGCAATGTCATGATATTGAGTTTGGCTCACTTGACCAGATTGTCAATGAAACGATTCCAGCACTTCAAAAGCTGAAGGAGACGGGAAAGATTCGATACATTGGTATTACTGGTCTCCCTCTCCATGTTTTCACCTATGTGCTTGACAGAGTCCCGCCTGGCTCAGTGGACGTGATACTGTCATACTGTCATTATAGCATTAATGACACTTCACTGGAGGATTTATTGCCTTACTTGAAGAGCAAGGGTGTTGGAGTCATCACTGCTTCTCCTCTGTCAATGGGCCTCCTTACTGAGAATGGACCTCCAGAATGGCATCCTGCACCCTCAGAGCTAAAGTCTGCGTGTGCAGCTGCTGCAGCTCATTGCAAAGCTAAGGGGAAGAATATCTCAAAACTATCTTTGCAATATAGCTTGAAGAACAAGGATATTGCTTCAGTGTTGGTTGGCATGAACTCTGTTCAACAGGTTCGAGAAAATATTGCTGCCACTGTTGAAGTTGAAGAAGGTCAATGTATTGATCAAGAGTTGCTGGAGGAAGTAGAAGCTATCATTAGGCCAGTGAAGAACCTAACTTGGCCAAGTGGTATTGTTCATAATTAG___CTTATTTTGTCATAAAGTTTGAAATATTTATTGCTTTATGATCTGATGCTTGACATTAAATGTTAGATTGCCCATTTTTTTGTGGGGCAATCTACATTATTACTCTATAATTAATTCTCAATAAAACCTTCAAGAAAGAACTTGTCAGCAGATGAGGCTTTTCTATTATCTCGAGCTAAAATTGCTTTGATAGATGAACTATGTGGACCCAAGATATGTTTTTCTTTGAATTTATCCATCATGATTTTG

Fln Alignment:

Contig3410___RGVGNTGLEVSSLGFGASPLGNVFGNVKEEDAIASVHEAFR-LGINFFDTSPYYGGTLSEKMLGKALKTLMVPRDQYIVSTKC---GRYAEGFDFSAERVTQSIDESLARLNLDYVDILQCHDIEFGSLDQIVNETIPALQKLKETGKIRYIGITGLPLHVFTYV------LDRVPPGSVDVILSYCHYSI--NDTSLEDLLPYLKSKGVGVITASPLSMGLLTENGPPEWHPAPS-----------------ELKSXXXXXXXXXXXKGKNISKLSLQYSLKNKDIASVLVGMNSVQQVRENIAATVEVEEGQCIDQELLEEVEAIIR
Q40648_________________KNLGRSGLRVSQLSYGAWV---TFGNQLDVKEAKALLQACRDAGVNFFDNAEVYANGRAEEIMGQAMRDLGWRRSDVVVSTKLFWGGQGPNDKGLSRKHIVEGLRGSLKRLDMDYVDVVYCHRPD---ATTPVEETVRAMNWVIDHGMAFYWGTSEWSAQQITEAWSVANRLDLVGP-----IVEQPEYNLFSRHKVESEFLPLYSTYGLGLTTWSPLASGVLTGKYAKGNIPADSRFALENYKNLANRSLVDDTLRKVNGLKPIASELGVSLAQLAIAWCASNPNVSSVITGATKENQIVENMKA---LDVIPLLTPEVVDKIEAVVQ

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1163	16		83		0.994512
1171		50		50	1.0
1328		33	66		0.997452
1329		33		66	0.997452
1331	33		66		0.997452
1332			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain