SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3381

Length: 268 nt

UniGene Fasta

>biog2_v2.0_unigene3381
AGTCGAATGGAATGTGGAGACCATTGGGTTCTCTATGCAACTGTTGTAGATGGCCAATTACAGGATGACAAAACCCTCACTGCTCTTCACTATCGGAAGACAGGGACACGCTACTAGGTCCGTTGATTTTCATAATGTCTCTAAACCTGGATGGTCCACGAATATAAGGAGCAGGGTGGATGGACACTCAGTAGATAACGTTTCTGTCAAAGTCGGGGATTGGCTTTGCCATGTCCTTCAGAATATTCTAGTGAGATTAGTTGATGAA

Ace file of the UniGene biog2_v2.0_unigene3381

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8385	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	flavin reductase-like protein [Anabaena variabilis ATCC 29413] gb\|ABA21425.1\| Flavin reductase-like, FMN-binding protein [Anabaena variabilis ATCC 29413]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	flavin reductase- fmn-binding protein	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	65%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	65%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	65%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	65%
Blast2go	FMN binding	GO:0010181	Molecular Function	65%

Source	InterPros	Term	Type	Identity
Sma3	Flavodoxin, conserved site	IPR001226	-	-
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	Flavin reductase-like, FMN-binding	IPR002563	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	Virulence factor, secretion apparatus	IPR008514	-	-
Sma3	FMN-binding split barrel	IPR012349	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A962

Fln msg: your sequence is shorter than subject: 39 - 158

Fln protein: SRMECGDHWVLYATVVDGQLQDDKTLTALHYRKTGTRY*

Protein Length: 40

Fln nts: AGTCGAATGGAATGTGGAGACCATTGGGTTCTCTATGCAACTGTTGTAGATGGCCAATTACAGGATGACAAAACCCTCACTGCTCTTCACTATCGGAAGACAGGGACACGCTACTAG___GTCCGTTGATTTTCATAATGTCTCTAAACCTGGATGGTCCACGAATATAAGGAGCAGGGTGGATGGACACTCAGTAGATAACGTTTCTGTCAAAGTCGGGGATTGGCTTTGCCATGTCCTTCAGAATATTCTAGTGAGATTAGTTGATGAA

Fln Alignment:

Contig3381___SRMECGDHWVLYATVVDGQLQDDKTLTALHYRKTGTRY
D5A962_________________SHMESGDHWVLYATVEDGQLQDDKTLTALHYRKTGTRY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain