SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3375

Length: 1141 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3375 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17460	2/34
SustainPine v2.0	sp_v2.0_unigene22205	32/34

Source	Descriptions	Term	Type	Identity
AutoFact	OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb\|AAC98030.1\| ESTs gb\|234051 and gb\|F13722 come from this gene [Arabidopsis thaliana] gb\|AAM62726.1\| unknown [Arabidopsis thaliana] gb\|AAO22770.1\| unknown protein [Arabidopsis	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	0.0	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1008	40		60		1.0
1027	40		60		1.0
1052	40		60		1.0
1106	75	25			0.996473
1107	75	25			0.996473
1113	75			25	0.996473
1118		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain