SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3368

Length: 511 nt

UniGene Fasta

>biog2_v2.0_unigene3368
ATGGGATTTTCAGCTGCAGCCGAAGTCCTTCACATGGTAGGTGAAGATGCAAGGTTAATTCAAGAGTTTGTAGACCTTGGTGCCAAAGCCAAAGCTGCAGCTAATGACGCGATGGACACTGAAGCTATGCTTGGAGATATACCAGATGAATTCCTTGATCCAATTCAGTGCACACTGATGACGGATCCTGTTATTTTACCTTCTTCACGAACAACTGTGGATCGAGCAACAATACAAAGACATCTACTGAGTGATCCTACTGATCCATTCAATCGATCTCATCTTACTCCCGAGATGCTGATCCCTGATATTGAGCTGAAGGCTAAAATCAAGGAGTTTATCCAGTCCAAGTCATTGAGCTGAGCATTATGGGAAATTATGGTTATCTGTATAATATCAAATTATGGGGATAGGCTTTGCAAGTACTGATTCCATTGTCCCATAACCAGAGAAGGGGGTGACATTTGCCTTCTGGCTAATTTTTCCCATACATGTCAAAACGATTCAACAA

Ace file of the UniGene biog2_v2.0_unigene3368

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2092	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	putative ubiquitin conjugation factor E4 [Arabidopsis thaliana] sp\|Q9LF41.1\|UBE4_ARATH RecName: Full=Probable ubiquitin conjugation factor E4; AltName: Full=Plant U-box protein 1; AltName: Full=U-box domain-containing protein 1; AltName: Full=Ubiquitin-fu	-	-	57%
FL-Next	sp=Probable ubiquitin conjugation factor E4; Arabidopsis thaliana (Mouse-ear cress).	-	-	72%
Blast2go	probable ubiquitin conjugation factor e4-like	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	0.0	72%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	U box domain	IPR003613	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9LF41

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 23 aas, your sequence is shorter than subject: 121 - 1038

Fln protein: MGFSAAAEVLHMVGEDARLIQEFVDLGAKAKAAANDAMDTEAMLGDIPDEFLDPIQCTLMTDPVILPSSRTTVDRATIQRHLLSDPTDPFNRSHLTPEMLIPDIELKAKIKEFIQSKSLS*

Protein Length: 122

Fln nts: ATGGGATTTTCAGCTGCAGCCGAAGTCCTTCACATGGTAGGTGAAGATGCAAGGTTAATTCAAGAGTTTGTAGACCTTGGTGCCAAAGCCAAAGCTGCAGCTAATGACGCGATGGACACTGAAGCTATGCTTGGAGATATACCAGATGAATTCCTTGATCCAATTCAGTGCACACTGATGACGGATCCTGTTATTTTACCTTCTTCACGAACAACTGTGGATCGAGCAACAATACAAAGACATCTACTGAGTGATCCTACTGATCCATTCAATCGATCTCATCTTACTCCCGAGATGCTGATCCCTGATATTGAGCTGAAGGCTAAAATCAAGGAGTTTATCCAGTCCAAGTCATTGAGCTGA___GCATTATGGGAAATTATGGTTATCTGTATAATATCAAATTATGGGGATAGGCTTTGCAAGTACTGATTCCATTGTCCCATAACCAGAGAAGGGGGTGACATTTGCCTTCTGGCTAATTTTTCCCATACATGTCAAAACGATTCAACAA

Fln Alignment:

Contig3368___FSAAAEVLHMVGEDARLIQEFVDLGXXXXXXXNDAMDTEAMLGDIPDEFLDPIQCTLMTDPVILPSSRTTVDRATIQRHLLSDPTDPFNRSHLTPEMLIPDIELKAKIKEFIQS
Q9LF41_________________FNAGADVLRRIGEEGRIIQEFMELGTKAKAAASEALDAEAALGEIPDEFLDPIQYTLMRDPVILPSSRITVDRPIIQRHLLSDNHDPFNRAHLTSDMLIPDIELKAKIDEFVKS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
39	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain