SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3364

Length: 333 nt

UniGene Fasta

>biog2_v2.0_unigene3364
ATTACAAGTGCCTGAAAAGTATCAGGGTTCTTGAACGTGCATATTATTTACATGGATTCTTCAGTTCACATGGTTGAGGAAGGTTCCAATGCAGATTTATATTCAGCACTGGACCTGAGTGAGTCTGAAGTAGGATTCTGTGAAAGTCCCCGTGTGTTGCCTATTTTGGCCTCTCTTCTAGATAGAGTTGTACAAAGAAATGAAAAGTTACTAGAGGCTACGAAGAAGCAAGAAAAATAACAGTTTTCATGGCCTCCGAGCACCCAACTTAAGCATTCGAAGTTACATTGATAGAATTTTCAAGTACTCAAACTGCAGCCCATCATGCTTTAC

Ace file of the UniGene biog2_v2.0_unigene3364

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28211	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam08613, Cyclin, Cyclin	-	-	4.0e-32	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	protein	-	-	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin P/U	IPR012389	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin PHO80-like	IPR013922	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP68

Fln msg: Separated hits, possible frame ERROR between 207 and 230, Distance to subject end: 145 aas, your sequence is shorter than subject: 94 - 241

Fln protein: MDSSVHMVEEGSNADLYSALDLSESEVGFCESPRVLPILASLLDRVVQRNExxxxxxxxxKKNNSFHGLRAPNLSIRSYIDRIFKYSNCSPSCF

Protein Length: 95

Fln nts: ATTACAAGTGCCTGAAAAGTATCAGGGTTCTTGAACGTGCATATTATTTAC_-_ATGGATTCTTCAGTTCACATGGTTGAGGAAGGTTCCAATGCAGATTTATATTCAGCACTGGACCTGAGTGAGTCTGAAGTAGGATTCTGTGAAAGTCCCCGTGTGTTGCCTATTTTGGCCTCTCTTCTAGATAGAGTTGTACAAAGAAATGAAAAxxxxxxxxxxxxxxxxxxxxxxxxCAAGAAAAATAACAGTTTTCATGGCCTCCGAGCACCCAACTTAAGCATTCGAAGTTACATTGATAGAATTTTCAAGTACTCAAACTGCAGCCCATCATGCTTTAC

Fln Alignment:

Contig3364___LDLSESEVGF-----CESPRVLPILASLLDRVVQRNEKxxxxxxxxKKNNSFHGLRAPNLSIRSYIDRIFKYSNCSPSCF
A9NP68_________________LGVEEEEEGYECPPESQLPRILAVLSYALQRLVTRNDQxxxxxxxxKKITVFHGVRSPSITVAKYLERIYKYTSCSPSCF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
227	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain