SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3293

Length: 1105 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3293

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9405	48/48

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heterotrophic ferredoxin 2 [Helianthus annuus]	-	-	4.00001e-41	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	ferredoxin- chloroplast	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	electron transport chain	GO:0022900	Biological Process	79%
Blast2go	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	79%
Blast2go	metal ion binding	GO:0046872	Molecular Function	79%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	79%

Source	InterPros	Term	Type	Identity
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	Ferredoxin [2Fe-2S], plant	IPR010241	-	-
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
3			66	33	0.997452
7	66		33		0.997452
15		33		66	1.0
197	25	75			0.996473
220	75		25		0.996473
256		60		40	1.0
278		83	16		0.994512
279		83	16		0.994512
280	83		16		0.994512
286	14		85		0.993533
288			14	85	0.993533
289	85		14		0.993533
375		42	57		1.0
515	11		88		0.923564
661		25		75	0.996473
736		87		12	0.992554
737			12	87	0.992554
739			12	87	0.992554
762	11		88		0.923564
765	88		11		0.923564
841		88	11		0.923564
848		11		88	0.923564
857	88		11		0.923564
957	85		14		0.993533
964		42		57	1.0
976	14		85		0.993533
1096		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain