SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3292

Length: 360 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3292
TGCTTGAATTTGAGGCGAGGGTGGACGCGGCCCTGGCCAGAAAGAAGACTGATATCCAGGAAGCCCTGAAAAATCCGCCCTCCCTTCAGCGCACGCTGCGAATCTATGTTTTCAACACCTTTGCAAATCAAAACCACCACGCCCGTGGTACCGATGACAAGCAACATATGTTGGAGCAACCGTCGTGGACCCTGAGAATTCTCGGAAGGATTCTAGAGGATGGCATAGAGACGGATGCTTCTGCTTCCGCCGGCACTATTCCAAAGCAACAGAGTTCATCGTTTCCCAAGTTTTCGTCTTTCTTTAAGAGGATCACAGTCAATTTGGATCCTAGTCTGTATCCTGATAACCCTGTCATTA

Ace file of the UniGene biog2_v2.0_unigene3292 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15368	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	SWI/SNF complex component SNF12 homolog n=2 Tax=Arabidopsis RepID=SNF12_ARATH	-	-	64%
FL-Next	sp=SWI/SNF complex component SNF12 homolog; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	chromatin remodeling complex subunit	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	root development	GO:0048364	Biological Process	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	SWIB/MDM2 domain	IPR003121	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FMT4

Fln msg: Distance to subject end: 254 aas, your sequence is shorter than subject: 119 - 534

Fln protein: LEFEARVDAALARKKTDIQEALKNPPSLQRTLRIYVFNTFANQNHHARGTDDKQHMLEQPSWTLRILGRILEDGIETDASASAGTIPKQQSSSFPKFSSFFKRITVNLDPSLYPDNPVI

Protein Length: 120

Fln nts: TGCTTGAATTTGAGGCGAGGGTGGACGCGGCCCTGGCCAGAAAGAAGACTGATATCCAGGAAGCCCTGAAAAATCCGCCCTCCCTTCAGCGCACGCTGCGAATCTATGTTTTCAACACCTTTGCAAATCAAAACCACCACGCCCGTGGTACCGATGACAAGCAACATATGTTGGAGCAACCGTCGTGGACCCTGAGAATTCTCGGAAGGATTCTAGAGGATGGCATAGAGACGGATGCTTCTGCTTCCGCCGGCACTATTCCAAAGCAACAGAGTTCATCGTTTCCCAAGTTTTCGTCTTTCTTTAAGAGGATCACAGTCAATTTGGATCCTAGTCTGTATCCTGATAACCCTGTCATTA

Fln Alignment:

Contig3292___LEFEARVDAALARKKTDIQEALKNPPSLQRTLRIYVFNTFANQNHHARGTDDKQHMLEQPSWTLRILGRILEDGIETDASASAGTIXXXXXXXXXXXXXXXKRITVNLDPSLYPDNPVI
Q9FMT4_________________LEFESRVDAALTRKKVDIQEALKNPPCIQKTLRIYVFNSFANQNNTIPGNPN----ADPPTWTLKIIGRILEDGVDPDQPG----FVQKANPLHPKFSSFFKRVTVSLDQRLYPENPLI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
79	75		25		0.996473
200		80		20	0.995493
203	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain