SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3279

Length: 1098 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3279

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene126	10/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cohesin-like protein [Oryza sativa Indica Group] gb\|EEC71958.1\| hypothetical protein OsI_04789 [Oryza sativa Indica Group]	-	-	6.0e-23	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	cohesin subunit	-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	sister chromatid cohesion	GO:0007062	Biological Process	0.0	64%
Blast2go	nuclear chromosome	GO:0000228	Cellular Component	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rad21/Rec8-like protein, C-terminal, eukaryotic	IPR006909	-	0.0	-
Sma3	Rad21/Rec8-like protein, N-terminal	IPR006910	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS19

Fln msg: your sequence is shorter than subject: 254 - 355

Fln protein: YESSAGMVCDRAVMSGPVVSECREDTGGPHHAIIHNVPLDKIVETPGTSVQDVGPEITKQHEQVMMFESSAEMDYDGAVMSGAVSSEGREDCSGRHLEVIHSVPQEDEGMRVSTANDNDMNDKFDFLGDAKVTEFLGGDDDGQDEFGGKNNANDAEKDQAQDDSGWSARTRAVSRYLKTVFEGMDQNSKKPQEENNQKLGLDRLLVGKTRKEAARMFFETLVLKTRDYVHVEQQDSFDDISIFPRAKLMKTNF*

Protein Length: 255

Fln nts: TACGAGAGTTCAGCAGGGATGGTTTGTGATAGAGCAGTAATGTCAGGACCTGTGGTTTCCGAGTGTAGAGAAGACACCGGTGGACCTCACCATGCAATTATTCATAATGTGCCTTTGGACAAGATTGTAGAAACTCCTGGTACTTCTGTTCAAGATGTGGGACCAGAAATAACAAAGCAGCATGAACAGGTTATGATGTTTGAAAGCTCAGCAGAGATGGATTATGATGGAGCAGTAATGTCAGGAGCTGTGTCTTCAGAGGGTAGAGAAGACTGCAGTGGACGTCACCTTGAAGTTATTCATAGTGTGCCACAGGAAGATGAAGGAATGAGAGTTTCTACAGCAAATGATAATGATATGAATGATAAATTCGACTTCCTTGGGGACGCAAAAGTCACAGAATTCTTGGGAGGTGATGATGATGGACAAGATGAGTTCGGGGGTAAGAATAATGCCAATGATGCAGAAAAGGATCAGGCTCAGGATGATAGTGGATGGTCTGCAAGAACAAGGGCTGTTAGCCGATACTTGAAGACTGTCTTTGAGGGCATGGATCAAAATTCAAAGAAACCACAAGAAGAAAATAATCAGAAACTTGGTCTTGACCGCCTTTTGGTGGGAAAGACAAGAAAGGAAGCAGCTCGAATGTTTTTTGAGACTTTGGTTCTGAAGACGAGGGATTATGTTCATGTGGAGCAGCAGGATTCTTTTGATGATATAAGTATATTCCCAAGGGCAAAGCTCATGAAAACAAACTTTTGA___AGGGGTGTCAACTTGCCTATTTAACTTTTACATTTTTTGTTCAGTACATTGGTACCTCATGATTACCCTCGACATGCCTTGAAATAAATTGTTGTAGCATATTTTGCAACTGCAAGATCCTTGACATTAACAAGATTTTCAGTTTGCAATTTGTACTATGGGACAATGTCCTTTGTAAAAATTGTACACCATTTAGTAGGATCTAGGAAAGAATTCTGCTCAGGATCTCTTATTCAACATTTCAATTGATCAAACGGTTATTCGTTTGAATAAGCCTTATGTATTTACAAAAGTTATTGTGAATATTATTTAGCTAGTAATGAATTATTTGCATTA

Fln Alignment:

Contig3279___YESSAGMVCDRAVMSGPVVSECREDTGGPHHAIIHNVPLDKIVETPGTSVQDVGPEITKQHEQVMMFESSAEMDYDGAVMSGAVSSEGREDCSGRHLEVIHSVPQEDEGMRVSTANDNDMNDKFDFLGDAKVTEFLXXXXXXXXXXXXKNNANDAEKDQAQDDSGWSARTRAVSRYLKTVFEGMDQNSKKPQEENNQKLGLDRLLVGKTRKEAARMFFETLVLKTRDYVHVEQQDSFDDISIFPRAKLMKTNF
B8LS19_________________YESSTEMVCDGAVMSGAVVSEGREDCSGPHHEVIHNVALGKIVETPGTSVQDVVPEITKQHQHVVMYESSAEMDCDGAVMSGAVSSEGREDCSGCHHEVIHDVPQEDEAMRGSTANDNDVNDKIDFLGDAKVTECLGGDDDGQDEFEGKNNAHDAEKDQTQDNSGWSARTRAVSRYLKTVFEGMDQNSKKPQEENQLKLGLDRLLVGKTRKEAARMFFETLVLKTRDYVHVEQKDSFDDISLFPRTKLMKTNF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1053			33	66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain