SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3276

Length: 1048 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3276 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6051	9/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=ATP synthase delta chain, chloroplastic; AltName: Full=F-ATPase delta chain; Flags: Precursor gb\|AAA33647.1\| ATP synthase delta subunit [Pisum sativum]	-	-	9.0e-36	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	71%
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	71%
Blast2go	photosynthetic electron transport in photosystem I	GO:0009773	Biological Process	71%
Blast2go	response to cold	GO:0009409	Biological Process	71%
Blast2go	photosynthetic electron transport in photosystem II	GO:0009772	Biological Process	71%
Blast2go	hydrogen ion transporting ATP synthase activity, rotational mechanism	GO:0046933	Molecular Function	71%
Blast2go	proton-transporting ATP synthase complex, catalytic core F(1)	GO:0045261	Cellular Component	71%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	71%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	71%
Blast2go	plastoglobule	GO:0010287	Cellular Component	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	71%
Blast2go	stromule	GO:0010319	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7U9

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 237 - 280

Fln protein: MDTLTQSLGSLNVHSRSSAQALQPREPVQRLPVTNLSPKSHYSRLFAPAHLTISKPGIGSATRNSYSLDALASRIPHANAKSPVRRAVVVTRDSAAGGYAAALLQFAQANNMLEVINGDMERLSHLLKNQELYDFLINPITENGKKKSILKSIADDAKFQNYTLNFLNLLISKQKIGIVKNILKEFESLYNELTDTQVAFVSSALKLEKHQLAQIAKKIQSLTGAKNVKLKSIIDSS

Protein Length: 238

Fln nts: ATTATATACCGCGCGATACGCTTTTCATCGGGCCGGACCATCCGATATCTTCTCCCTGGTAAGATTTTGAGTATGTGGTTCACATTCTTTGGCCAAACCATCTCTGAGGTTGCCACGTTGTAAGAAACTCCAAGTGATTGGGAGAGGAGGTTGTTTGGAGATTATATGCGATATGCTTTTCAGCATTGCAGGCCACCTATTTGTTCTCTACGGTACGATTTTGGCCGTCTGGTTCGTATATTCCTAGGCGTATAATGCAGTTGTAGTGGCATTATTGCATAAACGTCAGATTGATCAAAATTTCATTGCCAGGAAACTTTCTGCTGAGATTGTCCAG_-_ATGGATACATTAACGCAATCCCTCGGTTCCTTGAATGTGCATTCAAGATCATCTGCACAAGCGCTTCAGCCTCGGGAACCTGTTCAACGGCTTCCTGTCACCAATTTATCACCAAAATCACATTACTCCAGGTTATTTGCACCTGCTCACTTGACTATTTCAAAACCAGGGATTGGAAGTGCAACCAGAAACTCTTATTCACTTGATGCTTTGGCTTCAAGAATCCCACATGCAAATGCAAAAAGTCCTGTACGACGGGCTGTTGTTGTGACGCGTGATTCTGCAGCGGGTGGATATGCGGCAGCTCTTTTGCAATTTGCACAGGCAAATAACATGTTAGAGGTGATTAATGGGGATATGGAAAGACTTTCTCATTTGTTGAAGAACCAGGAACTCTATGATTTTCTCATCAATCCTATTACTGAAAATGGGAAGAAGAAGAGCATTCTCAAGTCTATTGCAGATGATGCTAAGTTTCAAAACTATACTCTGAATTTCCTGAATCTTCTTATCAGTAAGCAAAAGATTGGCATAGTAAAGAATATCTTGAAAGAATTTGAATCATTATACAATGAACTGACAGATACCCAGGTTGCTTTTGTATCCTCTGCATTGAAGCTCGAGAAACACCAGTTAGCGCAGATTGCAAAGAAAATACAGAGCTTAACTGGGGCAAAAAATGTAAAACTCAAGAGCATTATTGACTCCTCT

Fln Alignment:

Contig3276___MDTLTQSLGSLNVHSRSSAQALQPREPVQRLPVTNLSPKSHYSRLFAPAHLTISKPGIGSATRNSYSLDALASRIPHANAKSPVRRAVVVTRDSXXXXXXXXXXXXXXANNMLEVINGDMERLSHLLKNQELYDFLINPITENGKKKSILKSIADDAKFQNYTLNFLNLLISKQKIGIVKNILKEFESLYNELTDTQVAFVSSALKLEKHQLAQIAKKIQSLTGAKNVKLKSIIDSS
D5A7U9_________________MDTLTQSLATLNVHSRPPAQVLQSREPVQLLPAAILSPRSRSSRPFAPAHLTISKKGIEAAFKNSYTLDALASRIPQANAESPVRRAVVVMRESAAGGYAAALLQFAQANNMLEMINGDMEKLSHLLKNRELYDFLINPITENGKKKSILKSIADDAKFQTYTLNFLNLLISKQKIGIVNNILKEFESLYNELTDTQVAFVSSALKLENRELAQIAKKIQSLTGARNVKLKCIIDSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain