SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3239

Length: 345 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3239
TGGGCACTGGTCATTGGTGCTCTGGTACTCTGTTGGAGTTTATGGAGAATTTGCTCTCATGGAATTCCTTATAGAGCTGTCGCAATTGAAGCGCAACAATCTTTAGCACAATGGGATTTCAGGATCCAGAGGTTTGATGATACCAATGTGACTGCTGGTACTCAAGAAAATCAAAATGTGAGTTCTGCTGTTCAGCAGAATCAGAGCAATGAACATGAAATGAATGGCAAAGAAGAGGAATCCTTGTATCGGTCAATGGATGAGTGGGAGAAAAGTTCTGATAATTTCTATGCTGATTCCGACTTTAGTTACGCTGTTGGGAGCACCGTGAAAAATTGGGACCTT

Ace file of the UniGene biog2_v2.0_unigene3239 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6898	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Galactomannan galactosyltransferase n=1 Tax=Senna occidentalis RepID=Q564G6_9FABA	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	galactomannan galactosyltransferase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	73%
Blast2go	N-Glycan biosynthesis	00510	73%
Blast2go	Mucin type O-Glycan biosynthesis	00512	73%
Blast2go	Various types of N-glycan biosynthesis	00513	73%
Blast2go	Other types of O-glycan biosynthesis	00514	73%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	73%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	73%
Blast2go	Lipopolysaccharide biosynthesis	00540	73%
Blast2go	Peptidoglycan biosynthesis	00550	73%
Blast2go	Glycerolipid metabolism	00561	73%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	73%
Blast2go	Sphingolipid metabolism	00600	73%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	73%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	73%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	73%
Blast2go	Carotenoid biosynthesis	00906	73%
Blast2go	Zeatin biosynthesis	00908	73%
Blast2go	Flavonoid biosynthesis	00941	73%
Blast2go	Anthocyanin biosynthesis	00942	73%
Blast2go	Flavone and flavonol biosynthesis	00944	73%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	73%
Blast2go	Betalain biosynthesis	00965	73%
Blast2go	Biosynthesis of type II polyketide products	01057	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	73%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	73%
Blast2go	integral to membrane	GO:0016021	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Galactosyl transferase	IPR008630	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWS4

Fln msg: Distance to subject end: 338 aas, your sequence is shorter than subject: 115 - 479

Fln protein: WALVIGALVLCWSLWRICSHGIPYRAVAIEAQQSLAQWDFRIQRFDDTNVTAGTQENQNVSSAVQQNQSNEHEMNGKEEESLYRSMDEWEKSSDNFYADSDFSYAVGSTVKNWDL

Protein Length: 116

Fln nts: TGGGCACTGGTCATTGGTGCTCTGGTACTCTGTTGGAGTTTATGGAGAATTTGCTCTCATGGAATTCCTTATAGAGCTGTCGCAATTGAAGCGCAACAATCTTTAGCACAATGGGATTTCAGGATCCAGAGGTTTGATGATACCAATGTGACTGCTGGTACTCAAGAAAATCAAAATGTGAGTTCTGCTGTTCAGCAGAATCAGAGCAATGAACATGAAATGAATGGCAAAGAAGAGGAATCCTTGTATCGGTCAATGGATGAGTGGGAGAAAAGTTCTGATAATTTCTATGCTGATTCCGACTTTAGTTACGCTGTTGGGAGCACCGTGAAAAATTGGGACCTT

Fln Alignment:

Contig3239___WALVIGALVLCWSLWRICSHGIPYRAVAIEAQQSLAQWDFRIQRFDDTNVTAGTXXXXXXXXXXXXXXXXEHEMNGKEEESLYRSMDEWEKSSDNFYADSDFSYAVGSTVKNWD
A9NWS4_________________WALVIVALVLCWSLWRICSSGISYRALTIEARDSSAQWDLRIQKFGDPNVTSAIQQNQNGSSAIQQNQTNEREMNDKEEESLYRSMDQWEESSDNFYADSDFSYTVGSTVKNWD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
33		33		66	0.997452
135	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain