SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3226

Length: 509 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3226
CAATTGAAGGAGAGCGGGTAACTTGTGGTTTTGATAATAAGGTGAGAAGGGTACCTCTCCTATCAGAGCAACATAAAGAGTCAGAACCAATTGACATTGGAGCACAACCAAAGGATCTAGATGTTGCAGTTGGTTGCCCTGAGCTTACTTTTGTTTCCACTGATGCTGGGATAATAATTATTCGTGGGTCAAAAATAGTATCAACTACTAATGTTGGGTATGCAGTGACTGCAGCTGCAATATCACCTGATGGAACAGAGGCTGTGGTTGGTGGTCAGGATGGGAAATTGCGTGTGTACTCCATCAAAGGTGACACTCTTCTGGAAGAGTCAGTCCTTGAAAGACATCGTGGTCCAATAAATGCAATCCGCTTTTCTCCTGATGGATCCATGTTTGCATCAGGAGACCTGAATAGAGAAGCAGTTGTATGGGACCGTACTACTAGAGAGGTGAAACTTAAGAACATGGTTTTACCCACTACTTGCACGTATCAATTGCATTGCATGGTT

Ace file of the UniGene biog2_v2.0_unigene3226 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10248	5/6

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj\|BAB02018.1\| WD40-repeat protein [Arabidopsis thaliana] gb\|AAL32514.1\| WD40-repeat protein [Arabidopsis thaliana] gb\|AAM47943.1\| WD40-repeat protein [Arabidopsis thaliana] gb\|AEE76041.1\|	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	66 kda stress protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	82%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQY8

Fln msg: Distance to subject end: 82 aas, your sequence is shorter than subject: 169 - 326

Fln protein: IEGERVTCGFDNKVRRVPLLSEQHKESEPIDIGAQPKDLDVAVGCPELTFVSTDAGIIIIRGSKIVSTTNVGYAVTAAAISPDGTEAVVGGQDGKLRVYSIKGDTLLEESVLERHRGPINAIRFSPDGSMFASGDLNREAVVWDRTTREVKLKNMVLPTTCTYQLHCMV

Protein Length: 170

Fln nts: CAATTGAAGGAGAGCGGGTAACTTGTGGTTTTGATAATAAGGTGAGAAGGGTACCTCTCCTATCAGAGCAACATAAAGAGTCAGAACCAATTGACATTGGAGCACAACCAAAGGATCTAGATGTTGCAGTTGGTTGCCCTGAGCTTACTTTTGTTTCCACTGATGCTGGGATAATAATTATTCGTGGGTCAAAAATAGTATCAACTACTAATGTTGGGTATGCAGTGACTGCAGCTGCAATATCACCTGATGGAACAGAGGCTGTGGTTGGTGGTCAGGATGGGAAATTGCGTGTGTACTCCATCAAAGGTGACACTCTTCTGGAAGAGTCAGTCCTTGAAAGACATCGTGGTCCAATAAATGCAATCCGCTTTTCTCCTGATGGATCCATGTTTGCATCAGGAGACCTGAATAGAGAAGCAGTTGTATGGGACCGTACTACTAGAGAGGTGAAACTTAAGAACATGGTTTTACCCACTACTTGCACGTATCAATTGCATTGCATGGTT

Fln Alignment:

Contig3226___IVSTTNVGYAVTAAAISPDGTEAVVGGQDGKLRVYSIKGDTLLEESVLER-HRGPINAIRFSPDGSMFASGDLNREAVVWDRTT
B8LQY8_________________ILTITGIKGRINRAVWGPLNRTIISGGEDAVVRIWDSETGKLLRESEKETGHQKPITSLFKSADGSHFLTGSLDKSAKLWDIRT

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
434		25		75	0.996473
436		25		75	0.996473
437	25			75	0.996473
454		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain