SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3206

Length: 523 nt

UniGene Fasta

>biog2_v2.0_unigene3206
TAGTTGCGTTAGTGGTATTTTCTCCATCTATTAAGCCCAGGCATCGGTGCTGCAGTTTTAGCAGGAGAGTGCCTTACAGAGCTGAGAGCACAGTTCCAGATCCTCTTAGGCTTTTGGTTGAAACGATAGGTTCCTATTGAGAAAGATGAGCAGTAGTCTTGCCTGCCGTGTGTAAGAATATATACCCAAAATGGCTGGAAGAAGGGGTGAGGCGCCAGGGCGGCGTCTATCAAGGACGCATACCACTGGGAACCTTCCGGATTCGGCGTTTGACAGTGAAGTTATCCCGTCATCTCTCGCGGGCATAGCGCCCATTCTGCGTGTCGCCAATGAGATCGAGGCTCAGTGTCCAAGAGTTGCCTATCTGTGTCGGTTCTATGCCTTTGAAAAAGCTCACAAATTGGATCCGACATCTAGTGGTCGAGGCGTTCGCCAGTTCAAAACAGCCCTGCTACAACGACTTGAAAGGGATGCCGCGCCAACCATGGCGGCTAGAAAGAAGAAAAGTGATGCAAGAGAAATG

Ace file of the UniGene biog2_v2.0_unigene3206

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10164	2/5
SustainPine v2.0	sp_v2.0_unigene13371	3/5

Source	Descriptions	Term	Type	Identity
AutoFact	putative callose synthase 1 catalytic subunit [Oryza sativa Japonica Group]	-	-	72%
FL-Next	sp=Callose synthase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	callose synthase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	1,3-beta-glucan synthase.	EC:2.4.1.34	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	83%
Blast2go	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	83%
Blast2go	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	Hly-III-related	IPR004254	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9LXT9

Fln msg: Distance to subject end: 1847 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 111 - 1964

Fln protein: MAGRRGEAPGRRLSRTHTTGNLPDSAFDSEVIPSSLAGIAPILRVANEIEAQCPRVAYLCRFYAFEKAHKLDPTSSGRGVRQFKTALLQRLERDAAPTMAARKKKSDAREM

Protein Length: 112

Fln nts: TAGTTGCGTTAGTGGTATTTTCTCCATCTATTAAGCCCAGGCATCGGTGCTGCAGTTTTAGCAGGAGAGTGCCTTACAGAGCTGAGAGCACAGTTCCAGATCCTCTTAGGCTTTTGGTTGAAACGATAGGTTCCTATTGAGAAAGATGAGCAGTAGTCTTGCCTGCCGTGTGTAAGAATATATACCCAAA_-_ATGGCTGGAAGAAGGGGTGAGGCGCCAGGGCGGCGTCTATCAAGGACGCATACCACTGGGAACCTTCCGGATTCGGCGTTTGACAGTGAAGTTATCCCGTCATCTCTCGCGGGCATAGCGCCCATTCTGCGTGTCGCCAATGAGATCGAGGCTCAGTGTCCAAGAGTTGCCTATCTGTGTCGGTTCTATGCCTTTGAAAAAGCTCACAAATTGGATCCGACATCTAGTGGTCGAGGCGTTCGCCAGTTCAAAACAGCCCTGCTACAACGACTTGAAAGGGATGCCGCGCCAACCATGGCGGCTAGAAAGAAGAAAAGTGATGCAAGAGAAATG

Fln Alignment:

Contig3206___RRLSRTHTTGNLPDSAFDSEVIPSSLAGIAPILRVANEIEAQCPRVAYLCRFYAFEKAHKLDPTSSGRGVRQFKTALLQRLERDAAPTMAARKKKSDAREM
Q9LXT9_________________RRIIRTQTAGNLGES-FDSEVVPSSLVEIAPILRVANEVESSNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTALLQRLEREHDPTLMGRVKKSDAREM

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
478		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain