SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3204

Length: 2293 nt

UniGene Fasta

>biog2_v2.0_unigene3204
ATGGGGATGGGACAGCGTAAACCCTTTGGTTCTGCATATCGAAGCATATTAGAGCCAGAGGCAGATATCCATCTGCGAGCAGTAATGGCGTCCATGGGGTTCCTGCAAGCCCTTGAATGGCCCTTGCTGCTTCTTTGCCTTCTGATGGCTTCCCCAGCAAATTCATTTTATCTTCCAGGGGTCGCCCCTCAGGACTTCTCCAAGGGTGATGAGCTGCAAGTGAAAGTGAACAAGTTGACCTCCACCAAGACACAACTGCCTTATGATTTCTATTATCTGGACTACTGCAAGCCAAACGAAATTGTAAACAGTGCTGAAAATCTAGGGGAAGTTCTTCGTGGTGACCGTATTGAGAACTCTCCATATGTTTTTCAAATGAGAGAAAACAAGCTGTGCAACTATGTTTGCACTAAGAAACTCGACTCAAAGTCTGCGAAGAAGTTCAAAGATAAAATAGATGATGAATATCACGTCAACATGATACTGGATAATCTTCCGCTGGTTATACCCCGGAAAAGGGCAGACGGAAACCAAGCTACTTCCTATGAACATGGTTTCCGGGTTGGGTTCAAAGCTAGTTATGCAGGGAGTGTAGAAGAGAGATACTTTATCCACAACCATCTAGCTTTTACTGTAAAGTTTCATAGGGACACTGAGACTGATACTGCACGCATTGTTGGTTTTGAAGTCATGCCATACAGTGTGAAGCATGAATATGAACAACCTTGGGATCCTGAGAAACCACGGTTAACAACTTGCAACGCAAATACAAAGCGTTATGTTTCAGGTGTTGATACTCCCCAGGAAGTGGAGGAGGGTAAAGAGGTCATCTTCACGTATGATGTTATCTTCGAGGAAAGTCCCGTGAAATGGGCATCCCGATGGGATACATACCTTCTGATGACAGATGATCAGATACACTGGTTCTCCATTATTAATTCACTGATGATTGTTCTCTTCCTCTCTGGCATGGTGGCAATGATCATGATGAGAACTTTGTATAGGGATATCTCAAAATACAACCAGTTGGAGACACAAGACGAAGCACAAGAAGAAACAGGATGGAAATTGGTCCATGGAGATGTGTTCAGGCCCCCTACTCATTCGAGCTTGCTTTGTGTGTATGTGGGAACTGGTGTTCAGTTTTTGGAATGACACTTGTTACAATGATATTTGCTATGCTTGGTTTCCTTTCTCCTTCCAACCGTGGTGGGTTGATGACAGCTATGGTTCTATTGTGGGTGTTCATGGGTTTGTTCGCTGGCTACTCCTCTGCCCGGCTATATAAGATGTTCAAGGGCGCAGAATGGAAGAAAAACACACTAAAGACTGCTTTCACGTTTCCTGGAATCGTTTTCTGCATTTTCTTTGTATTGAATGCATTGATCTGGGGTGAGAAATCTTCTGGTGCTGTACCTTTTGGGACTATGTTTGCTTTGGTCTTTTTGTGGTTTGGAATTTCCGTGCCCTTGGTTTTTATTGGCAGCTACTTTGGCTACAAGAAACCTGCAATTGAAGATCCAGTGAAAACAACAAATTCCCAGGCAAATTCCTGAACAGGCTTGGTACATGCAGCCTGTTTTCTCCGTACTCATTGGCGGCATATTACCGTTTGGTGCTGTTTTCATTGAGCTGTTTTTCATCCTGACTTCCATATGGCTGAATCAGTTCTACTACATCTTTGGGTTCTTGTTCATAGTCTTTGTTATCCTGCTTGTCACCTGCGCAGAGATTACCATTGTTCTCTGCTACTTCCAGCTGTGCAGTGAAGATTATCACTGGTGGTGGAGAGCATATCTGACTTCAGGCTCTTCAGCGCTCTACCTGTTTCTATATGCAATATTTTACTTCTTCACGAAACTGGAGATTACTAAACTTGTTTCTGCCTTTTTGTACTTTGGCTACATGACGATCATTTCATATGCTTTCTTTGTATTGACGGGTACTATAGGCTTCTATGCATGCTTCTGGTTCGTCCGAAAAATTTACTCATCGGTGAAGATTGACTAAAGCTGTTAGTATTTTTTCGAAATCACCGAGGATATAGTCAATGACGAGGAAGCAGAGAATATTAACGTGTACAAGTTACTCATTATTCGCAACTGCCAGGTCGCAAGCAAAGAAAAGCCCGGCTTGTAGAAAAGTAAATCTGTGTGGTGAATTCTACTACTCGGTGCCTTCTTTATGATGAAGGCCACCAATTTGTTGAAGCCACTATGGAAATTTGTGTTAATTTGCTTTGCATTGAGAAAATTGTGTTAGTAATAACATTATTTCTTTGATTCTCAGATCC

Ace file of the UniGene biog2_v2.0_unigene3204

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17269	54/54

Source	Descriptions	Term	Type	Identity
AutoFact	Multispanning membrane protein-like n=6 Tax=Arabidopsis RepID=Q9LIC2_ARATH	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	endosomal p24a protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	cellular zinc ion homeostasis	GO:0006882	Biological Process	88%
Blast2go	cellular copper ion homeostasis	GO:0006878	Biological Process	88%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	88%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Fibrillarin	IPR000692	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Protein of unknown function DUF914, eukaryotic	IPR009262	-	-
Sma3		IPR017442	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC25

Fln msg: Overlapping hits, possible frame ERROR between 1146 and 1047, your sequence is longer than subject: 669 - 370

Fln protein: MGMGQRKPFGSAYRSILEPEADIHLRAVMASMGFLQALEWPLLLLCLLMASPANSFYLPGVAPQDFSKGDELQVKVNKLTSTKTQLPYDFYYLDYCKPNEIVNSAENLGEVLRGDRIENSPYVFQMRENKLCNYVCTKKLDSKSAKKFKDKIDDEYHVNMILDNLPLVIPRKRADGNQATSYEHGFRVGFKASYAGSVEERYFIHNHLAFTVKFHRDTETDTARIVGFEVMPYSVKHEYEQPWDPEKPRLTTCNANTKRYVSGVDTPQEVEEGKEVIFTYDVIFEESPVKWASRWDTYLLMTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGAEWKKNTLKTAFTFPGIVFCIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFIGSYFGYKKPAIEDPVKTTNSQANS*TGLVHAACFLRTHWRHITVWCCFH*AVFHPDFHMAESVLLHLWVLVHSLCYPACHLRRDYHCSLLLPAVQ*RLSLVVESISDFRLFSALPVSICNILLLHETGDY*TCFCLFVLWLHDDHFICFLCIDGYYRLLCMLLVRPKNLLIGED*

Protein Length: 670

Fln nts: _-_ATGGGGATGGGACAGCGTAAACCCTTTGGTTCTGCATATCGAAGCATATTAGAGCCAGAGGCAGATATCCATCTGCGAGCAGTAATGGCGTCCATGGGGTTCCTGCAAGCCCTTGAATGGCCCTTGCTGCTTCTTTGCCTTCTGATGGCTTCCCCAGCAAATTCATTTTATCTTCCAGGGGTCGCCCCTCAGGACTTCTCCAAGGGTGATGAGCTGCAAGTGAAAGTGAACAAGTTGACCTCCACCAAGACACAACTGCCTTATGATTTCTATTATCTGGACTACTGCAAGCCAAACGAAATTGTAAACAGTGCTGAAAATCTAGGGGAAGTTCTTCGTGGTGACCGTATTGAGAACTCTCCATATGTTTTTCAAATGAGAGAAAACAAGCTGTGCAACTATGTTTGCACTAAGAAACTCGACTCAAAGTCTGCGAAGAAGTTCAAAGATAAAATAGATGATGAATATCACGTCAACATGATACTGGATAATCTTCCGCTGGTTATACCCCGGAAAAGGGCAGACGGAAACCAAGCTACTTCCTATGAACATGGTTTCCGGGTTGGGTTCAAAGCTAGTTATGCAGGGAGTGTAGAAGAGAGATACTTTATCCACAACCATCTAGCTTTTACTGTAAAGTTTCATAGGGACACTGAGACTGATACTGCACGCATTGTTGGTTTTGAAGTCATGCCATACAGTGTGAAGCATGAATATGAACAACCTTGGGATCCTGAGAAACCACGGTTAACAACTTGCAACGCAAATACAAAGCGTTATGTTTCAGGTGTTGATACTCCCCAGGAAGTGGAGGAGGGTAAAGAGGTCATCTTCACGTATGATGTTATCTTCGAGGAAAGTCCCGTGAAATGGGCATCCCGATGGGATACATACCTTCTGATGACAGATGATCAGATACACTGGTTCTCCATTATTAATTCACTGATGATTGTTCTCTTCCTCTCTGGCATGGTGGCAATGATCATGATGAGAACTTTGTATAGGGATATCTCAAAATACAACCAGTTGGAGACACAAGACGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGAATGACACTTGTTACAATGATATTTGCTATGCTTGGTTTCCTTTCTCCTTCCAACCGTGGTGGGTTGATGACAGCTATGGTTCTATTGTGGGTGTTCATGGGTTTGTTCGCTGGCTACTCCTCTGCCCGGCTATATAAGATGTTCAAGGGCGCAGAATGGAAGAAAAACACACTAAAGACTGCTTTCACGTTTCCTGGAATCGTTTTCTGCATTTTCTTTGTATTGAATGCATTGATCTGGGGTGAGAAATCTTCTGGTGCTGTACCTTTTGGGACTATGTTTGCTTTGGTCTTTTTGTGGTTTGGAATTTCCGTGCCCTTGGTTTTTATTGGCAGCTACTTTGGCTACAAGAAACCTGCAATTGAAGATCCAGTGAAAACAACAAATTCCCAGGCAAATTCCTGAACAGGCTTGGTACATGCAGCCTGTTTTCTCCGTACTCATTGGCGGCATATTACCGTTTGGTGCTGTTTTCATTGAGCTGTTTTTCATCCTGACTTCCATATGGCTGAATCAGTTCTACTACATCTTTGGGTTCTTGTTCATAGTCTTTGTTATCCTGCTTGTCACCTGCGCAGAGATTACCATTGTTCTCTGCTACTTCCAGCTGTGCAGTGAAGATTATCACTGGTGGTGGAGAGCATATCTGACTTCAGGCTCTTCAGCGCTCTACCTGTTTCTATATGCAATATTTTACTTCTTCACGAAACTGGAGATTACTAAACTTGTTTCTGCCTTTTTGTACTTTGGCTACATGACGATCATTTCATATGCTTTCTTTGTATTGACGGGTACTATAGGCTTCTATGCATGCTTCTGGTTCGTCCGAAAAATTTACTCATCGGTGAAGATTGA___CTAAAGCTGTTAGTATTTTTTCGAAATCACCGAGGATATAGTCAATGACGAGGAAGCAGAGAATATTAACGTGTACAAGTTACTCATTATTCGCAACTGCCAGGTCGCAAGCAAAGAAAAGCCCGGCTTGTAGAAAAGTAAATCTGTGTGGTGAATTCTACTACTCGGTGCCTTCTTTATGATGAAGGCCACCAATTTGTTGAAGCCACTATGGAAATTTGTGTTAATTTGCTTTGCATTGAGAAAATTGTGTTAGTAATAACATTATTTCTTTGATTCTCAGATCC

Fln Alignment:

Contig3204___MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGAEWKKNTLKTAFTFPGIVFCIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFIGSYFGYKKPAIEDPVKT
D5AC25_________________MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGSEWKKNTLKTAFMFPGIVFCIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFIGSYFGYKKPAIEDPVKT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
869	66		33		0.997452
950	75		25		0.996473
1308		75		25	0.996473
1984	11	88			0.923564
2098		83	16		0.994512
2099			16	83	0.994512
2100		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain