SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3170

Length: 476 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3170
CGTGGACTGTTGCTTCTCTATTCTTCTTTGGGAGATGCAGAAGGGATCTCGAAACTTGCATCGATGGCCAGAGATCAGGGGAAGAACAATGTTTCTTTCCTGTGTTTAATTCATGCTGGGAAAGTTAGAAGAATGCATTCAACTTTTGGTAGACAGCAATCGTATACCTGAAGCTGCTTTTATGGCTCGTTCCTATCTTCCCAGCAAGGTTTCAGAAATTGTCTCTATTTGGCGTAATGATCTCAAAAAGGTGAACCAAAAGGCGGCTGAAGCTTTAGCAGATCCAGAAGAGTATCCCAACCTGTTTGAAGATTGGCATTTAGCACTTGATGCTGAAGCTAAACTAAGGAGATGCAGAGATGGGTATCCTCCTGCGGAAGATTACTATCGTTATATTGGTATTGCAAATAGAGACCTCTTAGAAGATTTTAAGAATATGCAAGTCAATGGAGATACCCCTGTCGAAAATGGGGATT

Ace file of the UniGene biog2_v2.0_unigene3170 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21083	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	coatomer complex subunit [Brachypodium sylvaticum]	-	-	78%
FL-Next	sp=Coatomer subunit beta'-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	coatomer subunit beta -3	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	Coatomer beta' subunit	IPR016453	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C827

Fln msg: Overlapping hits, possible frame ERROR between 126 and 110, Distance to subject end: 71 aas, your sequence is shorter than subject: 159 - 926

Fln protein: RGLLLLYSSLGDAEGISKLASMARDQGKNNVSFLCLxxxxxxxEECIQLLVDSNRIPEAAFMARSYLPSKVSEIVSIWRNDLKKVNQKAAEALADPEEYPNLFEDWHLALDAEAKLRRCRDGYPPAEDYYRYIGIANRDLLEDFKNMQVNGDTPVENGD

Protein Length: 160

Fln nts: CGTGGACTGTTGCTTCTCTATTCTTCTTTGGGAGATGCAGAAGGGATCTCGAAACTTGCATCGATGGCCAGAGATCAGGGGAAGAACAATGTTTCTTTCCTGTGTTTAxxxxxxxxxxxxxxxxxxxxxGAAGAATGCATTCAACTTTTGGTAGACAGCAATCGTATACCTGAAGCTGCTTTTATGGCTCGTTCCTATCTTCCCAGCAAGGTTTCAGAAATTGTCTCTATTTGGCGTAATGATCTCAAAAAGGTGAACCAAAAGGCGGCTGAAGCTTTAGCAGATCCAGAAGAGTATCCCAACCTGTTTGAAGATTGGCATTTAGCACTTGATGCTGAAGCTAAACTAAGGAGATGCAGAGATGGGTATCCTCCTGCGGAAGATTACTATCGTTATATTGGTATTGCAAATAGAGACCTCTTAGAAGATTTTAAGAATATGCAAGTCAATGGAGATACCCCTGTCGAAAATGGGGATT

Fln Alignment:

Contig3170___GLLLLYSSLGDAEGISKLASMARDQGKNNVSFLCLxxxxxxEECIQLLVDSNRIPEAAFMARSYLPSKVSEIVSIWRNDLKKVNQKAAEALADPEEYPNLFEDWHLALDAEAKLRRCRDGYPPAEDYYRYIGIANRDLLEDFKNMQVNGDTPVENGD
Q9C827_________________GLLLLYSSLGDAEGVTKLATLAKEQGKNNVAFLCLxxxxxxEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSKVNSKAAESLADPEEYSNLFEDWQVALSVEAKAVETRGVYTGAKDYPSHADKSSMTLVEAFRNLQVEEEESLENGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain