SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3155

Length: 1193 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3155 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1026	8/8

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ank_2 domain containing protein	-	-	5.0e-12	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	zinc finger ccch domain-containing protein 30-like	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	62%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPY9

Fln msg: Overlapping hits, possible frame ERROR between 413 and 391, Distance to subject end: 224 aas, your sequence is shorter than subject: 397 - 768

Fln protein: DVNRLDAYGRRPADVIMVSPKLTEIKVRLEEMLNAAGSGQTSPAKLPNIVSGPPGFESKGMESMSPLPLLPLSLSLEASNNRSGCVNSPTSSPKSMEALKGFGDVNEKKEYPVDPSFPDIKNSIYTTDExxxxxxxxxRPCSRAYSHDWTECPFVHPGENARRRDPRRYHYSCVPCPDFRKGTCRRSDVCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTSEELRPLIVSTGSAVPSPRASSSLDMTSVMSPLAPGSPSSVSMMSPFLSNPQQGSVLTPPMSPSASSVNGYGGWPQPNVPTLHLPGSNVQTSRLRAELNARDMPVEDSPRISDYEGQQLLNDFSPLSTQARLNAAAAVISGGGNTTTRSAKYKSHGINTVAPTNLEDLFA

Protein Length: 398

Fln nts: GTGATGTGAATCGCTTGGATGCTTATGGCAGAAGACCAGCAGATGTGATTATGGTTTCTCCTAAGCTAACCGAAATCAAGGTCAGGCTAGAAGAAATGTTAAACGCAGCTGGTTCTGGTCAAACTTCTCCGGCGAAGTTGCCTAACATAGTTTCAGGGCCACCTGGGTTTGAGTCAAAGGGGATGGAGTCCATGTCCCCATTGCCATTGTTGCCACTTTCATTGTCTTTAGAAGCATCCAATAATAGATCAGGTTGTGTGAATTCTCCAACATCTTCACCAAAGTCCATGGAAGCATTAAAGGGTTTCGGTGATGTTAATGAGAAGAAGGAATACCCTGTGGACCCTTCTTTTCCAGACATAAAGAACAGTATCTATACTACAGATGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxCGGCCATGTTCACGGGCATATTCTCATGATTGGACCGAATGCCCATTTGTGCATCCTGGTGAAAACGCCAGAAGGCGGGATCCAAGAAGGTATCATTATAGCTGTGTTCCTTGCCCAGATTTTCGGAAAGGGACTTGTAGGCGCAGTGATGTTTGTGAATATGCACACGGTGTTTTTGAGTGCTGGTTACATCCTGCTCAATATAGGACACGGTTGTGCAAAGATGGGACTAATTGTTCACGTAGAGTTTGCTTCTTTGCTCACACATCTGAGGAACTACGCCCTCTCATTGTCTCTACGGGGTCTGCTGTTCCATCCCCAAGGGCATCATCATCTCTGGACATGACATCTGTCATGAGTCCTCTTGCCCCTGGTTCTCCCTCTTCAGTTTCAATGATGTCACCCTTCCTATCAAATCCTCAGCAAGGCAGTGTGCTTACTCCGCCTATGTCTCCATCAGCATCCTCTGTAAATGGATATGGAGGCTGGCCACAGCCTAACGTACCAACCTTACACCTTCCTGGTAGCAATGTTCAAACCAGCCGTCTTAGAGCAGAACTTAATGCCAGAGACATGCCTGTTGAGGATTCTCCTCGAATTTCAGACTATGAAGGGCAGCAACTCCTGAATGATTTTTCTCCACTGTCCACACAAGCCAGGCTGAATGCTGCTGCTGCTGTTATATCTGGTGGCGGGAACACCACAACAAGGTCTGCAAAATACAAGAGTCACGGGATCAATACTGTTGCTCCAACGAATCTTGAAGACTTATTTGCCTC

Fln Alignment:

Contig3155___DVNRLDAYGRRPADVIMVSPKLTEIKVRLEEMLNAAGSGQTSPAKLPNIVSGPPGFESKGMESMXXXXXXXXXXXLEASNNRSGCVNSPTSSPKSMEALKGFGDVNEKKEYPVDPSFPDIKNSIYTTDExxxxxxxxRPCSRAYSHDWTECPFVHPGENARRRDPRRYHYSCVPCPDFRKGTCRRSDVCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTSEELRPLIVSTGSAVPSPRASSSLDMTSVMSPLAPGXXXXXXXXXPFLSNPQQGSVLTPPMSPSASSVNGYGGWPQPNVPTLHLPGSNVQTSRLRAELNARDMPVEDSPRISDYEGQQLLNDFSPLSTQARLNAAAAVISGGGNTTTRSAKYKSHGINTVAPTNLEDLFA
C0PPY9_________________DVNCFDAYGRRPADVIMVSPKLTEVKVKLEEMLNAAGTGQTSPTKVANIIPGLPGLESKGMESMPSSTLLPLSVSLEASNNRSGCVHSPTSSPKSMEALKGFGDVNEKKEYPVDPSFPDIKNSIYTTDExxxxxxxxRPCSRAYSHDWTECPFVHPGENARRRDPRRYHYSCVPCPDFRKGTCRRSDVCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTSEELRPLIVSTGSAVPSPRASSSLDMSSVMSPLAPGSPSSVSMMSPFLSNPQQGSVLTPPMSPSASSVNGYGGWPQPNVPTLHLPGSSVQASRLRAELNARDMPVEDSPRISDYEG-QLLNDFSPLSTQARMNAAAAVISGGGNTTTRSGKYKSHGINTVAPTNLEDLFA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
123	33		66		0.997452
282	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
101	114	CAG CAG CAG CAG CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain