SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3154

Length: 1246 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3154 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7987	37/37

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	nucleic acid binding	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNT1

Fln msg: your sequence is longer than subject: 321 - 245

Fln protein: MATNTVKVANVSLRASQRDIQDFFSFSGEIAHIELQRDTEHSQVAFVTFKDPQALDTALLLSGATIVDQSVNIFPVENYSPPAETPGSHAAQYPPNESTAVKGGGTAINKAQDVVTGMLAKGFILGKDAMNKAKAFDEKHGFTENASAKVTSFDKKIGFTEKITAGTSAVNEKVRSVDQKFQVSEKTKSAFAAAEQKVNSAGSALMKNKYVFTSAAWVTGAFSKVAKAAEDVGLKTKEKVQLAEGQKNIQSSTATGHLSHDFEQFHDAEPPNAFEPSAVPFSSAGNSATYSSLPRYDDDSFSPINHSVKGSSEPTKLPPA*

Protein Length: 322

Fln nts: ATGGGGATTGAATGACAGGGCTACGCCGACGACCTGGAAGAGTAGCAGAGAAGAAAGGCTATTAAATCGCCATTTTTATTGTTTGTTTTGTTGAAACGCCATTTTTTTCTCGTATTCTTTGGTTTGTTTCGGACGGCTCCAGATCTGCTA_-_ATGGCGACGAATACGGTGAAGGTCGCGAATGTTTCTCTCAGGGCAAGCCAGCGCGATATTCAGGACTTCTTCTCCTTCTCAGGAGAAATCGCACACATTGAGTTGCAGAGGGATACCGAGCATTCTCAAGTGGCCTTCGTTACCTTTAAGGATCCTCAGGCACTGGACACGGCTTTGCTTCTTTCGGGAGCGACAATTGTAGATCAGTCTGTTAACATATTTCCTGTTGAAAATTACTCGCCACCTGCTGAAACTCCGGGGAGTCATGCTGCACAGTATCCGCCCAACGAAAGTACTGCTGTGAAAGGAGGTGGTACTGCTATAAACAAGGCTCAGGATGTTGTGACAGGCATGCTTGCAAAAGGATTTATTCTAGGAAAGGATGCTATGAACAAAGCCAAGGCATTTGATGAGAAGCATGGCTTCACGGAAAATGCTTCTGCTAAGGTGACATCATTTGACAAGAAAATCGGTTTCACTGAAAAGATTACTGCTGGCACATCTGCTGTAAATGAGAAAGTGAGATCAGTGGATCAAAAATTTCAAGTATCAGAGAAAACAAAATCAGCATTTGCTGCAGCTGAGCAGAAGGTCAATAGTGCAGGTTCTGCCCTTATGAAGAACAAGTATGTGTTCACTTCTGCAGCATGGGTGACTGGTGCCTTCAGCAAGGTTGCAAAGGCCGCTGAGGATGTTGGTCTGAAAACTAAAGAAAAGGTTCAGTTAGCTGAAGGGCAAAAGAATATACAAAGTTCAACTGCAACCGGTCATCTATCCCATGATTTTGAACAATTTCATGATGCTGAACCTCCAAATGCATTCGAGCCTTCAGCTGTGCCATTTAGCTCAGCAGGAAACTCAGCTACGTATTCCAGCTTGCCACGATATGATGATGATTCTTTTTCACCCATTAATCACTCTGTCAAGGGGTCCAGCGAACCGACTAAACTACCACCTGCTTAA___GGCCTGATTAGTCACTTAAGATGGAAATTTATGTATCTACTACCTCTCTTGTATTAATGTAGTATTTTCTACCGGTTGAAGTTATGTAAATTGACATCTATTGTAGACCGCATGTTGATCATAAATTTTGTTG

Fln Alignment:

Contig3154___LMATNTVKVANVSLRASQRDIQDFFSFSGEIAHIELQRDTEHSQVAFVTFKDPQALDTALLLSGATIVDQSVNIFPVENYSPPAETPGSHAAQY-----PPNESTAVKGGGTAINKAQDVVTGMLAKGFILGKDAMNKAKAFDEKHGFTENASAKVTSFDKKIGFTEKITAGTSAVNEKVRSVDQKFQVSEKTKSAFAAAEQKVNSAGSALMKNKYVFTSAAWVTGAFSKVAKAAEDVGLK
B8LNT1_________________IMQSYTVQVMNLSPNATEQHVRDFFSHSGTIESVELERAGEEAQVAFVTFKEPYAVETAVLMSGATIVDQRVCIVSWGGSEQSFDLWNSPSWRLEHEYEDPEASYFVRTPGGAATTAQEVVTSMLSKGYVLGKDALSKAKSFDETHQVTASAAAKVASLGKRIGINDKISAGA----EAVRAVENKYHVSEKTKSMLLVAEQTVSTAGTAVVNSRYFTAGALWVSGVLEKAAQAAADLGSK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
91		33	66		1.0
167	25	75			0.996473
199	83		16		0.994512
326	80		20		0.995493
357		80		20	0.995493
358		16		83	0.994512
359		16		83	0.994512
360	16			83	0.994512
412			75	25	0.996473
413		66		33	0.997452
800		83		16	0.994512
934	85	14			0.993533
995	90		10		0.90298
1093	12		87		0.992554
1134		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain