SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3135

Length: 1004 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3135

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16254	18/20
SustainPine v2.0	sp_v2.0_unigene61662	1/20
SustainPine v2.0	sp_v2.0_unigene80471	1/20

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Eukaryotic translation initiation factor 2 subunit beta; Short=eIF-2-beta; AltName: Full=P38 gb\|AAB65774.1\| eIF-2 beta subunit [Triticum aestivum]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	eukaryotic translation initiation factor 2 subunit beta-like	-	-	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor IF2/IF5	IPR002735	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLI6

Fln msg: Overlapping hits, possible frame ERROR between 269 and 236,

Fln protein: MADDEAPPELKEEVTELAPFDPTKKKKKKKVLVQDAADEATEKVTEKMENLSVTDGIDSAFTGMRxxxxxxxxxxxxxDDNVDSTEDAIDNFGAEDGEGEGIILQARYPWDGTDRDYKYEELLDRVFNILRENNPELAGEKRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMTFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEGILRRYINEYVICNGCKSPDTILSKENRLFFLRCEQCGCSRSVAPIKAGFVARVARRKTGT*

Protein Length: 273

Fln nts: GGAAGATATCAGCCATCTGCCTGAATCTGTCTGTGAAG_-_ATGGCCGACGATGAAGCTCCACCGGAATTGAAAGAAGAAGTCACCGAGCTTGCTCCATTTGATCCTACCAAGAAAAAGAAGAAGAAGAAAGTTTTGGTGCAAGATGCCGCAGACGAAGCAACAGAGAAAGTGACTGAGAAGATGGAAAATCTTTCAGTTACTGATGGTATTGACTCTGCATTCACTGGGATGAGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATGATAATGTTGATAGCACAGAAGATGCTATTGATAATTTTGGGGCTGAGGATGGAGAAGGGGAGGGTATTATTTTGCAAGCTCGATATCCCTGGGACGGAACTGATCGTGATTACAAATATGAAGAGCTGCTTGACAGAGTGTTCAATATTTTGCGTGAGAACAATCCAGAACTTGCTGGTGAAAAGCGTAGAACTGTTATGAGGCCACCTCAAGTCCTTCGTGAGGGTACCAAAAAGACTGTATTTGTCAATTTTATGGATCTCTGCAAAACGATGCACAGACAGCCAGAACATGTGATGACATTCTTGCTTGCAGAAATGGGAACAAGCGGTTCTCTTGACGGACAACAACGGTTGGTTATTAAGGGAAGATTCGCCCCTAAAAATTTTGAGGGTATTTTAAGAAGATATATCAATGAGTATGTGATATGCAATGGTTGTAAGAGTCCAGATACTATCCTTTCAAAGGAGAATCGGCTTTTCTTCCTTCGTTGTGAACAGTGTGGATGTTCACGCTCTGTGGCACCTATCAAGGCTGGTTTTGTTGCTCGTGTTGCACGCCGTAAAACTGGCACATAA___ACCTTGAAAAGATTGTTGCAGTGTCACTATATGCACTTTATCCTTGTACCTAAATCGAGAACTGGCTTGCATTATAATTTTGAAAATCTGTCCTTGGTAATTGTTTGCATTAGAATTTGGTACTTCTGCATGTTCTTTATAGCAGTTCAAT

Fln Alignment:

Contig3135___DEAPPELKEEVTELAPFDPTXXXXXXXVLVQDAADEATEKVTEKMENLSVTDGIDSAFTGMRRxxxxxxxxxxxDDDNVDSTEDAIDNFGAEDGEGEGIILQARYPWDGTDRDYKYEELLDRVFNILRENNPELAGEKRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMTFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEGILRRYINEYVICNGCKSPDTILSKENRLFFLRCEQCGCSRSVAPIKAGFVARVARRKTGT
A9NLI6_________________EEAPVELKEEVTELAPFDPTKKKKKKKLLVQDTADEATETVTEKMENLSVNDGLDSAFTGMRRxxxxxxxxxxxDDDNVDSTEDAIGNHEGEDEEGEGIILHARYPWEGTDRDYKYEELLDRVFNILRENNPELAGEKRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMTFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEGILRRYINEYVICNGCKSPDTILSKENRLFFLRCEQCGCSRSVAPIKAGFVARVARRKTGT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
638	33			66	0.997452
640	66		33		0.997452
641			33	66	0.997452
642			33	66	0.997452
712	80		20		0.995493
874		14		85	0.993533

SSRs (tot: 2)

Start position	End position	Sequence	Length
114	127	AAG AAG AAG AAG AA	14
237	248	AAG AAG AAG AAG	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain