SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3115

Length: 572 nt

UniGene Fasta

>biog2_v2.0_unigene3115
TATTTGGGACATCATCAAGGCCTATAAAAGGCAAGCTCTGCATCTTCTCTCGGCCAAAGCACATTTCGGGATCATAGAACACAGTTGCAGATCTGAGGAGGAGTGTTCAGGGATGTATTGAAATCCAAGCTAACTACCCTCAATTTTTCTTATTCTCATTAATGGTGTTTCTCGACTCAGATTTTCACTCTGAAGAACCTTAGTTCCATTAAGTAGAAAGAAAGGTCGCAGCAGGTTTCAAGTTTCCAAAATGGTGGTCTTGGCAGCCTCTGTTATCACTAAGTCAGGGAAAGCCTTGGTTTCCAGGCAGTTTGTGGATATGACTAGAATTAGGATTGAAGGGCTGCTGGCTGCTTTTCCTAAGTTAGTTGGAAGTGGGAAACAACATACTTATGTCGAGACAGAGAATGTTCGCTATGTATACCAGCCAATGGAATCTCTGTATTTGCTGCTTATCACCAACAGGCAAAGTAATATCCTTCAAGATCTTGACACTCTGAGGCTGCTCTCCAAACTGGTGCCTGAATACTCCCCTGAATTGGATGAAGAAGGAATCTGTAGGATGGCATTTG

Ace file of the UniGene biog2_v2.0_unigene3115

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16889	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	delta-COP [Zea mays] gb\|AAF67098.1\|AF216852_1 delta-COP [Zea mays] gb\|ACR35834.1\| unknown [Zea mays]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	coatomer subunit delta	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Clathrin adaptor, mu subunit, C-terminal	IPR008968	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLU4

Fln msg: Distance to subject end: 422 aas, your sequence is shorter than subject: 107 - 529

Fln protein: MVVLAASVITKSGKALVSRQFVDMTRIRIEGLLAAFPKLVGSGKQHTYVETENVRYVYQPMESLYLLLITNRQSNILQDLDTLRLLSKLVPEYSPELDEEGICRMAF

Protein Length: 108

Fln nts: TATTTGGGACATCATCAAGGCCTATAAAAGGCAAGCTCTGCATCTTCTCTCGGCCAAAGCACATTTCGGGATCATAGAACACAGTTGCAGATCTGAGGAGGAGTGTTCAGGGATGTATTGAAATCCAAGCTAACTACCCTCAATTTTTCTTATTCTCATTAATGGTGTTTCTCGACTCAGATTTTCACTCTGAAGAACCTTAGTTCCATTAAGTAGAAAGAAAGGTCGCAGCAGGTTTCAAGTTTCCAAA_-_ATGGTGGTCTTGGCAGCCTCTGTTATCACTAAGTCAGGGAAAGCCTTGGTTTCCAGGCAGTTTGTGGATATGACTAGAATTAGGATTGAAGGGCTGCTGGCTGCTTTTCCTAAGTTAGTTGGAAGTGGGAAACAACATACTTATGTCGAGACAGAGAATGTTCGCTATGTATACCAGCCAATGGAATCTCTGTATTTGCTGCTTATCACCAACAGGCAAAGTAATATCCTTCAAGATCTTGACACTCTGAGGCTGCTCTCCAAACTGGTGCCTGAATACTCCCCTGAATTGGATGAAGAAGGAATCTGTAGGATGGCATTTG

Fln Alignment:

Contig3115___MVVLAASVITKSGKALVSRQFVDMTRIRIEGLLAAFPKLVGSGKQHTYVETENVRYVYQPMESLYLLLITNRQSNILQDLDTLRLLSKLVPEYSPELDEEGICRMAF
B8LLU4_________________MVVLAASVTTKTGKALVSRQFVDMTRIRIEGLLAAFPKLVGSGKQHTYIETENVRYVYQPMESLYLLLITNKQSNILQDLDTLRLLSKLVPEYSPELDEEGICRMAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain