SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3109

Length: 522 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3109
ATGCAGTGAAGAAGGTAATAGCTGCAATGACAGTTGGAAAAGATGTTTCATCACTGTTCACGGATGTCGTGAATTGCATGCAAACAGACAATTTGGAGCTGAAGAAGCTTGTCTATCTATATCTTATTAACTACGCTAAAAGTCAACCTGACCTTGCCATACTTGCAGTGAATACTTTTGTCAAGGATTCCCAAGATCCAAATCCTTTGATTCGTGCTCTAGCTGTACGAACAATGGGTTGTATTCGGGTTGACAAAATCACAGAGTATTTGTGTGATCCGCTTCAAAGATGCCTCAAGGATGATGATCCTTACGTGCGAAAGACGGCTGCTATATGTGTTGCTAAACTTTATGATATTAATGCTGAACTGGTGGAGGATAGAGGGTTTCTAGAGACTCTTAAGGACTTGATTTCAGACAGCAATCCCATGGTTGTAGCGAATGCCGTGGCAGCACTGGCAGAGATCCAAGAAAACAGTAGTAGAGCAATATTTGAAATTACTAGTCACACACTTTTTAAAC

Ace file of the UniGene biog2_v2.0_unigene3109 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4147	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	beta-adaptin-like protein B [Arabidopsis thaliana] sp\|Q9SUS3.1\|APBLB_ARATH RecName: Full=Beta-adaptin-like protein B; Short=At-bB-Ad; Short=At-betaB-Ad; AltName: Full=AP complex subunit beta-B; AltName: Full=Adaptor protein complex AP subunit beta-B; AltN	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	beta-adaptin-like protein c-like	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	90%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	90%
Blast2go	clathrin binding	GO:0030276	Molecular Function	90%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%
Blast2go	clathrin adaptor complex	GO:0030131	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Adaptor protein complex, beta subunit	IPR016342	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Beta2-adaptin/TBP, C-terminal domain	IPR012295	-	-
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	IPR008152	-	-
Sma3	Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain	IPR013037	-	-
Sma3	Beta-adaptin appendage, C-terminal subdomain	IPR015151	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNI5

Fln msg: Distance to subject end: 696 aas, your sequence is shorter than subject: 173 - 903

Fln protein: AVKKVIAAMTVGKDVSSLFTDVVNCMQTDNLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLETLKDLISDSNPMVVANAVAALAEIQENSSRAIFEITSHTLFK

Protein Length: 174

Fln nts: ATGCAGTGAAGAAGGTAATAGCTGCAATGACAGTTGGAAAAGATGTTTCATCACTGTTCACGGATGTCGTGAATTGCATGCAAACAGACAATTTGGAGCTGAAGAAGCTTGTCTATCTATATCTTATTAACTACGCTAAAAGTCAACCTGACCTTGCCATACTTGCAGTGAATACTTTTGTCAAGGATTCCCAAGATCCAAATCCTTTGATTCGTGCTCTAGCTGTACGAACAATGGGTTGTATTCGGGTTGACAAAATCACAGAGTATTTGTGTGATCCGCTTCAAAGATGCCTCAAGGATGATGATCCTTACGTGCGAAAGACGGCTGCTATATGTGTTGCTAAACTTTATGATATTAATGCTGAACTGGTGGAGGATAGAGGGTTTCTAGAGACTCTTAAGGACTTGATTTCAGACAGCAATCCCATGGTTGTAGCGAATGCCGTGGCAGCACTGGCAGAGATCCAAGAAAACAGTAGTAGAGCAATATTTGAAATTACTAGTCACACACTTTTTAAAC

Fln Alignment:

Contig3109___AVKKVIAAMTVGKDVSSLFTDVVNCMQTDNLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLETLKDLISDSNPMVVANAVAALAEIQENSSRAIFEITSHTLFK
B8LNI5_________________AVKKVIAAMTVGKDVSSLFTDVVNCMQTDNLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLETLKDLISDSNPMVVANAVAALAEIQENSSRTIFEITSHTLFK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
104	83		16		0.994512
113			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain