SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3104

Length: 484 nt

UniGene Fasta

>biog2_v2.0_unigene3104
ATGGGGGACAAAATTAAAAGTAGCTTTCTACATTTAGATGATTTAAGTTTTTGCGAGTGGATGCGCACTATGGAATTAGTTCCTCCTGAACCGAGCTAATTTCCAGAAGCATAATGAAGGTGTTCTCTGTACCCATTCTCTGCACTTACTGTGCACCAGGAAAGTGCAACCACTTGAGTTCAAAATGGAGTTGAGCATGGGCTATTTCATCCTGTGCATTCAGTGCGGAAGATGAAATTCTTTGGGTTGAAAGATGTCCGAACAAGGTCCTTAGATAGCAAATGATGATGTGACCTGTTAATTTACATTTCCATTGTTTTGGTTCTTGGAACAAGATATGAGGTATGTATTGGATGCCTTACGGAGATTTTACAAATTTTTGTATAAGCACTGTATATTTTGGAGGCATCAGTTAATAAGTAACTCAGAGCTGGTTGCATGAAAATATTCACTTGGCAGCAATAATTTTCAAGAATTGAATGAA

Ace file of the UniGene biog2_v2.0_unigene3104

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10232	2/6
SustainPine v2.0	sp_v2.0_unigene21393	4/6

Source	Descriptions	Term	Type	Identity
AutoFact	sec23/sec24-like transport protein [Arabidopsis thaliana] gb\|AAO22561.1\| putative protein transport factor [Arabidopsis thaliana] gb\|AEE82080.1\| sec23/sec24-like transport protein [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein transport protein sec23	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, Sec23/Sec24-type	IPR006895	-	-
Sma3	Sec23/Sec24, trunk domain	IPR006896	-	-
Sma3	Sec23/Sec24, helical domain	IPR006900	-	-
Sma3	Sec23/Sec24 beta-sandwich	IPR012990	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC86

Fln msg: your sequence is shorter than subject: 33 - 127

Fln protein: MGDKIKSSFLHLDDLSFCEWMRTMELVPPEPS*

Protein Length: 34

Fln nts: ATGGGGGACAAAATTAAAAGTAGCTTTCTACATTTAGATGATTTAAGTTTTTGCGAGTGGATGCGCACTATGGAATTAGTTCCTCCTGAACCGAGCTAA___TTTCCAGAAGCATAATGAAGGTGTTCTCTGTACCCATTCTCTGCACTTACTGTGCACCAGGAAAGTGCAACCACTTGAGTTCAAAATGGAGTTGAGCATGGGCTATTTCATCCTGTGCATTCAGTGCGGAAGATGAAATTCTTTGGGTTGAAAGATGTCCGAACAAGGTCCTTAGATAGCAAATGATGATGTGACCTGTTAATTTACATTTCCATTGTTTTGGTTCTTGGAACAAGATATGAGGTATGTATTGGATGCCTTACGGAGATTTTACAAATTTTTGTATAAGCACTGTATATTTTGGAGGCATCAGTTAATAAGTAACTCAGAGCTGGTTGCATGAAAATATTCACTTGGCAGCAATAATTTTCAAGAATTGAATGAA

Fln Alignment:

Contig3104___KIKSSFLHLDDLSFCEWMRTMELVPPEPS
D5AC86_________________KLKSSFLHLDDLSFCEWMRSMKLVPPEPS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
212	20	80			0.995493
215			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain