SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3067

Length: 935 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3067

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17115	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	eukaryotic translation initiation factor eIF2A-like protein [Arabidopsis thaliana] gb\|AAG52134.1\|AC010556_16 unknown protein; 49372-46275 [Arabidopsis thaliana] gb\|AAL07151.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14246.1\| unknown protein [Arabidop	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	eukaryotic translation initiation factor 2a	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor 2A, beta propellor-like domain	IPR013979	-	0.0	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNN9

Fln msg: Overlapping hits, possible frame ERROR between 382 and 379, Distance to subject end: 259 aas, your sequence is shorter than subject: 268 - 528

Fln protein: MDPSSPPLNYIVRGPEGLSLLVGPPFQDENPVVKLDKASCASAKFSDDGRNLLMITVNNVDIYDCDGATKIQTIDVPGVIAAxxxPRGRFLQTYRRSSGGQDKNLVLWDVQSGVAAHQLSQKNISKTNWPSFQFSEDEAVACRMATNEIHVFDPQNFAKGIVNKIRLPGIAGLQLATAPPTYFAAYIPESKGIPASIQIFKREDVGQAQPVARRSFFQCSNVQLIWNHGSTGLLVIAQSDVDKSNQSYYGESRLHYLTADGSHEGLVP

Protein Length: 269

Fln nts: ATGGGGATCCACTTTCTTCGCTGTGTTTTAACGGAAGCGAATCCTACTGAAGACGAATGATCGACCAACGGTGAATCAATTTACAGAGAAGACAAGTCTAGGGTTTGATTTCGTTTAGAGTGTCCCCATA_-_ATGGATCCTTCCTCGCCTCCGCTGAACTATATAGTTCGAGGCCCGGAAGGGTTGTCATTATTGGTCGGTCCGCCTTTTCAAGATGAGAACCCAGTCGTAAAACTTGATAAGGCGTCATGTGCGTCTGCAAAGTTCAGCGATGATGGACGGAACCTTTTGATGATCACAGTGAATAATGTGGACATTTATGACTGTGACGGAGCTACTAAAATCCAAACAATTGATGTTCCTGGTGTCATCGCTGCAxxxxxxxxxCCACGAGGTCGATTTTTGCAGACCTATCGGCGGTCATCTGGTGGCCAAGACAAGAATTTAGTACTATGGGATGTTCAATCTGGAGTTGCTGCGCATCAATTATCGCAGAAAAATATATCTAAAACCAATTGGCCTTCATTCCAATTCAGTGAAGATGAGGCAGTTGCTTGTCGAATGGCAACCAATGAGATTCATGTTTTTGATCCGCAAAACTTTGCTAAAGGAATTGTAAATAAGATCCGCCTTCCTGGAATAGCTGGTTTGCAACTTGCTACAGCTCCTCCAACATATTTTGCGGCATATATTCCCGAATCAAAGGGAATACCAGCCAGCATTCAGATATTTAAGCGAGAGGATGTTGGCCAGGCCCAGCCTGTAGCTCGACGGAGCTTTTTTCAGTGTTCCAATGTCCAGTTAATTTGGAACCATGGATCGACTGGATTGTTGGTTATTGCACAGTCTGATGTTGACAAAAGCAATCAAAGTTACTATGGGGAGTCCAGATTACATTACTTGACGGCTGATGGGAGTCACGAAGGGCTTGTGCCTCT

Fln Alignment:

Contig3067___MDPSSPPLNYIVRGPEGLSLLVGPPFQDENPVVKLDKASCASAKFSDDGRNLLMITVNNVDIYDCDGATKIQTIDVPGVIAAVxSPRGRFLQTYRRSSGGQDKNLVLWDVQSGVAAHQLSQKNISKTNWPSFQFSEDEAVACRMATNEIHVFDPQNFAKGIVNKIRLPGIAGLQLATAPPTYFAAYIPESKGIPASIQIFKREDVGQAQPVARRSFFQCSNVQLIWNHGSTGLLVIAQSDVDKSNQSYYGESRLHYLTADGSHEGLVP
B8LNN9_________________MDPSSPPLNYIVRGPEGLSLLVGPPFQDENPGVKLDKVPCTSAKFSDDGRKLLVITTNNVEIYDCDGATEIKTIDVPGIIAAVxSPRGRFLQTYRRSSGGQDKNLVLWNVQSGVAVHQLSQKNISKANWPSFQFSEDEAIVCRMATNEIHFFDTENFAKGIVNKIRLPGIAGLQLATSPPTYFAAYIPESKGIPASIQIFERENLSQVQPVARRSFFKCSSVQLIWNHGSTGLLVIAQSDVDKSNQSYYGESRLHYLTTDGSHEGPVP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
323		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain