SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3030

Length: 371 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3030
ATGGGACAAGATGAAGATGCAAGGTTCAAAGACTGGAAGAAAGGGTCATTTGAATGTAGCTACAGAGGTATTTGAAGTAGCTCCTTCTCTTTTTATGGTTGAAGTCCGCAAGGCTGGAGGTGATACCTTGGAATTTCACAAGTTTTACAAGAACCTTTCGGCAGGGCTAAAAGATGTTGTTTGGAAAGCAGAAGACACTGGGGAAGAGAAGAACAAAGTGTAAGTAGAATACTGGGGAAAGTACCATATTAGATACAATTACAATAATTTGTTTATCCACCTCTTGGTATTTTCTGTACTTTGGCAGTTTGTATATATACATATTACAAACAGATGTTTATTTTCTTCAAAAGTAACTCGTCCTTGCTAGG

Ace file of the UniGene biog2_v2.0_unigene3030 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22928	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 3 n=8 Tax=rosids RepID=A0MNJ1_POPTR	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	cbl-interacting serine threonine-protein	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	NAF domain	IPR004041	-	-
Sma3	NAF/FISL domain	IPR018451	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ83

Fln msg: your sequence is shorter than subject: 74 - 387

Fln protein: WDKMKMQGSKTGRKGHLNVATEVFEVAPSLFMVEVRKAGGDTLEFHKFYKNLSAGLKDVVWKAEDTGEEKNKV*

Protein Length: 75

Fln nts: ATGGGACAAGATGAAGATGCAAGGTTCAAAGACTGGAAGAAAGGGTCATTTGAATGTAGCTACAGAGGTATTTGAAGTAGCTCCTTCTCTTTTTATGGTTGAAGTCCGCAAGGCTGGAGGTGATACCTTGGAATTTCACAAGTTTTACAAGAACCTTTCGGCAGGGCTAAAAGATGTTGTTTGGAAAGCAGAAGACACTGGGGAAGAGAAGAACAAAGTGTAA___GTAGAATACTGGGGAAAGTACCATATTAGATACAATTACAATAATTTGTTTATCCACCTCTTGGTATTTTCTGTACTTTGGCAGTTTGTATATATACATATTACAAACAGATGTTTATTTTCTTCAAAAGTAACTCGTCCTTGCTAGG

Fln Alignment:

Contig3030___KMKMQGSKTGRKGHLNVATEVFEVAPSLFMVEVRKAGGDTLEFHKFYKNLSAGLKDVVWKAEDTGEEKN
B8LQ83_________________KMKMQGSKTGRKGHLNVATEVFEVAPSLYMVEVRKAGGDTLEFHKFYKNLSAGLKDVVWKAEDIGEEKN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain