SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3026

Length: 351 nt

UniGene Fasta

>biog2_v2.0_unigene3026
TTATCAAACTCAATCCAGTCTCATTTTCGGCATCCAATTCTCGTGTCTCGTTGCTCATTCAAAATGGGCGGTGCACCGCTCGAACTCCATTGAGGGGTTTTCTAATCACCGCAAGCCCTGCAAATACGATAAGGGTTTGTAACAGAAAAAGACTGATAGCCACGCGAGCGAGTGCAGATACAGTTGCAGTAGCAAGTGCTTCAGAAGGGATCAAGCCAGCAATATTATTATCTGAGAAAGCATTGAAACATTTAAATAAAATGAGAGCTGAGCGGAATGAGGATTTGTGTCTCAGAATTGGAGTTAGGCAGGGAGGTTGCTCTGGCATGTCATACATTATGGATTTTGAAC

Ace file of the UniGene biog2_v2.0_unigene3026

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5556	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Iron-sulfur assembly protein IscA, chloroplastic n=3 Tax=Arabidopsis RepID=ISCAP_ARATH	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	iron-sulfur assembly protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	iron-sulfur cluster assembly	GO:0016226	Biological Process	88%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	88%
Blast2go	iron-sulfur cluster binding	GO:0051536	Molecular Function	88%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	FeS cluster biogenesis	IPR000361	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	FeS cluster insertion	IPR016092	-	-
Sma3	FeS cluster insertion, C-terminal, conserved site	IPR017870	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTP2

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 30 - 94

Fln protein: MRAERNEDLCLRIGVRQGGCSGMSYIMDFE

Protein Length: 31

Fln nts: TTATCAAACTCAATCCAGTCTCATTTTCGGCATCCAATTCTCGTGTCTCGTTGCTCATTCAAAATGGGCGGTGCACCGCTCGAACTCCATTGAGGGGTTTTCTAATCACCGCAAGCCCTGCAAATACGATAAGGGTTTGTAACAGAAAAAGACTGATAGCCACGCGAGCGAGTGCAGATACAGTTGCAGTAGCAAGTGCTTCAGAAGGGATCAAGCCAGCAATATTATTATCTGAGAAAGCATTGAAACATTTAAATAAA_-_ATGAGAGCTGAGCGGAATGAGGATTTGTGTCTCAGAATTGGAGTTAGGCAGGGAGGTTGCTCTGGCATGTCATACATTATGGATTTTGAAC

Fln Alignment:

Contig3026___MRAERNEDLCLRIGVRQGGCSGMSYIMDFE
C0PTP2_________________MRAEKNEDLCLRIGVRQGGCSGMSYIMDFE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
261	33		66		0.997452
294		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain