SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3014

Length: 1183 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3014

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17062	6/30
SustainPine v2.0	sp_v2.0_unigene20310	24/30

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein SAR1A n=5 Tax=Embryophyta RepID=B4FPT6_MAIZE	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	gtp-binding protein sar1a	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	96%
Blast2go	cellular process	GO:0009987	Biological Process	96%
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	96%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Small GTPase superfamily, SAR1-type	IPR006687	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLN7

Fln msg:

Fln protein: MFLFDWFYSVLATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAADKERFAESKKELDALLSDDSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRPIEVFMCSIVRKMGYGEGIKWLSQYIK*

Protein Length: 195

Fln nts: ATTGGGATGGGGATTTGTGTGTGAGGCTTTGCTCACAATGCCTTTTTCTCGGGATTTCAGAGCAGAATTCCTACGTGACTAGAAGCTCCGGGGACAGATCCGTTGTGGGTTCTTCGTCTTTGGAGCGTGGCTATTTATTCTCAGGGTCTCTGCAATTCTGGACCCTGAGCTTTCTAGGGTCGTTTTCGGCTTTGAAATACTTAATTCCAGGTTCTGCTTAAGAAACTTTTGGAAGGCTCGAAG_-_ATGTTTCTGTTCGATTGGTTTTACAGCGTTCTTGCCACTCTAGGCCTGTGGCAGAAAGAGGCCAAGATTCTATTTCTTGGCCTAGATAATGCAGGCAAGACCACCTTGTTGCATATGTTGAAAGATGAGAGGTTAGTCCAACATCAACCTACTCAGTATCCTACATCTGAGGAACTGAGTATTGGTAAAATCAAGTTTAAGGCCTTCGATCTTGGAGGTCATCAAATTGCTAGAAGAGTCTGGAAAGACTATTATGCCAAGGTGGATGCCGTGGTCTATTTGGTTGATGCGGCAGATAAAGAGAGATTTGCAGAGTCAAAAAAGGAGCTCGATGCCTTACTTTCAGATGACTCTTTGACAAATGTGCCTTTCTTGATTTTAGGAAACAAGATTGATATTCCATATGCAGCATCTGAAGATGAGCTGCGCTATTACCTAGGCCTATCAAATTATACTACTGGCAAGGGCAAAGTGAATTTGGCAGATTCTAATGTTAGACCGATTGAGGTCTTCATGTGCAGTATCGTTAGGAAAATGGGTTATGGTGAAGGTATTAAATGGCTCTCTCAGTACATTAAATAG___GTTCACAAATGAACCGAGGAATCACCTTTTTGTTGTAATTAGTCAATGGCAGAACATTTAGTTTAGATTGTGTTCTTTTGAAATTGGTTAGTTTGGGGGCGGTATTTGTAATGAATGTTGAATAAGATGCGAAACGAATAGATCAGGACAGGAGAAATATGATTGCTGAGTCAAATTTAATTCAGAGTGCAGAGACTGTTAGTTATTCCTGACAATTTGAAAATTTCCTGGATATCATAATCATGAAATTGATTGTTTTAAACCCATCAGAAAGACTATTTTATATGCGTCAGATATCATAACATCTATGTCAGGACCTTGGATATCATCCCCATGTTACTGCAATACAGGGGTATCA

Fln Alignment:

Contig3014___MFLFDWFYSVLATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDDSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRPIEVFMCSIVRKMGYGEGIKWLSQYIK
A9NLN7_________________MFLFDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAADKERFAESKKELDALLSDDSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRAIEVFMCSIVRKMGYGEGIKWLSQYIK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
699	33			66	0.997452
827	25			75	0.996473
829		75	25		0.996473
830	75		25		0.996473
831		75	25		0.996473
872			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain