SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2978

Length: 1290 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2978 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1945	20/20

Source	Descriptions	Term	Type	Identity
AutoFact	ATPP2-A13, putative n=1 Tax=Ricinus communis RepID=B9SRL8_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	f-box family protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS34

Fln msg:

Fln protein: MGGNLSRPYGGEGETPYPGLADIPESCVARIFEHLGPIDICKLAGLNWAFKGASSCDYVWEQKLPICYQEMLSKLFISEPHFLSKKQIYALLCHPISFDDATKEVWLDRATGGVCFSISARAMAITGIDDHRYWRWIPYDESRFHEAAYLQQHWWFEVDGVVKFQLPAGEYSLSFRLRLGRPSRRLGRRIYVFDQIHGWDLKPVRFSLSTSDGQHAIRECYLEEPGEIEGNGIVSYARGNWTDYYVGNFEVKNDSKVTEVKFSMTQIDCTHSKGGLCLDLVSIIPSKLRKETVKDL*

Protein Length: 298

Fln nts: ATATTTGAGATGGGTTTGGGTTTGGGTTTTCTTTGCGGGTTCGCGGACATGAATTGTTTCAAGCCAAATCCGAGATAAGCTCAGGAGAAACGAAGAATTGGGAGCGTTAGTAACAAGGGGCCGACGATTAAGTCTGTTAGTGTTCGTGTGGGATTA_-_ATGGGTGGGAACCTCTCACGGCCCTACGGAGGAGAGGGAGAGACGCCGTATCCAGGGTTGGCTGATATACCAGAGAGTTGCGTTGCGAGGATTTTCGAGCACTTGGGTCCGATTGACATATGCAAGCTTGCTGGTCTAAATTGGGCCTTCAAGGGCGCGTCTTCTTGTGATTATGTGTGGGAGCAGAAATTGCCTATATGTTACCAGGAGATGCTTTCCAAACTGTTCATCTCAGAGCCCCATTTTCTCTCCAAGAAGCAGATATACGCTCTTCTTTGTCACCCAATTTCATTCGACGATGCCACCAAGGAGGTTTGGCTGGATAGGGCTACAGGAGGAGTCTGCTTTTCAATTTCTGCAAGAGCAATGGCCATCACTGGAATAGATGATCATCGTTACTGGAGATGGATTCCGTATGATGAGTCCAGGTTCCATGAAGCAGCATATCTTCAGCAACATTGGTGGTTTGAAGTAGATGGTGTTGTGAAATTTCAGCTTCCTGCAGGAGAATACAGTCTTTCTTTCAGGTTACGACTTGGAAGGCCTTCTAGAAGATTGGGTCGTCGGATTTATGTCTTTGATCAAATTCATGGATGGGACTTGAAACCTGTTCGGTTCTCTCTTTCTACATCTGATGGTCAGCATGCTATACGAGAGTGCTATTTGGAAGAGCCTGGTGAAATTGAAGGTAATGGCATTGTGAGTTATGCTCGTGGAAACTGGACTGACTATTATGTTGGCAACTTTGAGGTTAAGAACGATAGCAAAGTGACAGAAGTCAAGTTCTCCATGACACAAATTGATTGCACACATTCCAAAGGCGGTCTTTGCTTAGACCTCGTTTCAATTATTCCTAGCAAGCTTCGGAAGGAAACAGTTAAGGATTTGTAA___ATATTAGGTTCCCCTCTCCACCCCCCTAGAAGGATTGGGCAGTTTAAAAATACAGTAATATTGACATGCAGTTTCCATTTAGGATCTGAAAATTCTATACTGTGAGTCATTGCTACTGTTTGTGTGCAGATATGAAAGCTGATTGCATACAATAGAGTTAGTAAAATAAGGAAGAAATATTACGAGGATCTGCACTTGATGTATTTGCTGATTAAATGGCATGAATTTATGTAATACTGCTCT

Fln Alignment:

Contig2978___MGGNLSRXXXXXXXXXXXGLADIPESCVARIFEHLGPIDICKLAGLNWAFKGASSCDYVWEQKLPICYQEMLSKLFISEPHFLSKKQIYALLCHPISFDDATKEVWLDRATGGVCFSISARAMAITGIDDHRYWRWIPYDESRFHEAAYLQQHWWFEVDGVVKFQLPAGEYXXXXXXXXXXXXXXXXXRIYVFDQIHGWDLKPVRFSLSTSDGQHAIRECYLEEPGEIEGNGIVSYARGNWTDYYVGNFEVKNDSKVTEVKFSMTQIDCTHSKGGLCLDLVSIIPSKLRKETVKDL
A9NS34_________________MGGNLSRPYEGEGETPYPGLADIPESCVARIFQHLGPVDICKLAGLNWAFKGASSCDYVWEQKLPICYQEMLSKLFISEPHFLSKKQIYAHLCHPISFDDATKEVWLDRATGGVCLSISARAMAITGIDDHRYWRWIPYDESRFHEAAYLQQHWWFEVDGVVKFQLPAGEYSLSFRLRLGRPSRRLGRRIYVFDHIHGWDLKPVRFSLSTSDGQHAIRECYLEEPGEIEGNGIVSDARGKWTDYYVGEFEVKNESKVTEVKFSMTQIDCTHSKGGLCLDLVSIVPSKLRKETMKDL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
792	75		25		0.996473
1037		14		85	0.993533
1066		14		71	0.984337
1067		28	71		1.0
1068		28	71		1.0
1069		28		71	1.0
1260	66	33			0.997452
1261	66	33			0.997452
1262	66	33			0.997452
1263		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1262	1280	AAACCC AAACCC AAACCC A	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain