SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2975

Length: 401 nt

UniGene Fasta

>biog2_v2.0_unigene2975
TGGGAAAACCAAGGTGTCAGAAGCCCCTCAAAGCAACTCCAATGCTTTGATAGAAGGAACAGATGATTCAGAATGTGAGGAAGAAGGGGTACTTGACCATTGTGGGAAGCATTTGAACAAATCTTGTTTACCTCGATTGATGATTCCGAATGTCAGCTTCACTGAAAAGAAAAGACCATTAAGCCCTGGTCCACCATCTTTTAGAAAGAAGACATCATTGCTCAAGCTATCTTTCAAGCGCAAATCAACAGATGGACATGAGAACGCTAATATCTTTTCTTCAACACAGTTTCTAGAGAGACCTATAGCAGGGTCTCAGGTACCATATTGTCCAGCTGAAAAGGCAATGCCAGGATGTTGGTCTTTTATTGAACCTTCTACATTCAAGCTTCGCAGTGAAA

Ace file of the UniGene biog2_v2.0_unigene2975

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene269	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] gb\|AAF79756.1\|AC009317_15 T30E16.22 [Arabidopsis thaliana] dbj\|BAA87958.1\| CW14 [Arabidopsis thaliana] gb\|AAO42254.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63923.1\| unknown protein [Arabidopsis thalian	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	46%
Blast2go	uncharacterized protein	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1336	IPR009769	-	0.0	-
Sma3	EGF-like region, conserved site	IPR013032	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9S2F5

Fln msg: Distance to subject end: 247 aas, your sequence is shorter than subject: 133 - 512

Fln protein: GKTKVSEAPQSNSNALIEGTDDSECEEEGVLDHCGKHLNKSCLPRLMIPNVSFTEKKRPLSPGPPSFRKKTSLLKLSFKRKSTDGHENANIFSSTQFLERPIAGSQVPYCPAEKAMPGCWSFIEPSTFKLRSE

Protein Length: 134

Fln nts: TGGGAAAACCAAGGTGTCAGAAGCCCCTCAAAGCAACTCCAATGCTTTGATAGAAGGAACAGATGATTCAGAATGTGAGGAAGAAGGGGTACTTGACCATTGTGGGAAGCATTTGAACAAATCTTGTTTACCTCGATTGATGATTCCGAATGTCAGCTTCACTGAAAAGAAAAGACCATTAAGCCCTGGTCCACCATCTTTTAGAAAGAAGACATCATTGCTCAAGCTATCTTTCAAGCGCAAATCAACAGATGGACATGAGAACGCTAATATCTTTTCTTCAACACAGTTTCTAGAGAGACCTATAGCAGGGTCTCAGGTACCATATTGTCCAGCTGAAAAGGCAATGCCAGGATGTTGGTCTTTTATTGAACCTTCTACATTCAAGCTTCGCAGTGAAA

Fln Alignment:

Contig2975___KTKVSEAPQSNSNA-------------LIEGTDDSECEEEGVLDHCGKHLNKSCLPRLMIPNVSFTEKKRPLSPGPPSFRKKTSLLKLSFKRKSTDGHENANIFSSTQFLERPIAGSQVPYCPAEKAMPGCWSFIEPSTFKLRSE
B9S2F5_________________RNSVSEAPVSKFDGPSNEAKQPVFLDEIASSADENAGKEEGLLENCGI-LPGNCLPCLA-STVSQVEKRRSLSSSPPSARKKAAL-KLSFKWK--EGHANNSLFSSKPILQRPIAGSQVPFCPMDKKMLDCWSHIEPGSFKVRGQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain