SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2973

Length: 548 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene2973
GAACTACGTTTCCACATCTATTTCTGATGACCTATCCAACAGTGAAGCCACCCAAACCTGTGCAAACATATGTTCCACGTGTATATGGCTTCAAACTGCACCAGAGTGCCAGGTAGCCGGTGTTCATGGCTATAGAAAGATTGACGCAAGTAAAATGCCATTTATATTGAAATTATTGGAATTTACTGCAGGCATTTGGAATTCTGATGGTTGGAATTGAAACAAGTTTGATGTCAAATGACATCAATTTATTCATTTTAAGAGGCCCCTTTTAAAGTCATTAATTTCAAGGGGGTTCCTTTTTGAAGTCGGCTTAATGGCTGGTTGGCTCTTTTTTTTATATCTGCCATTCTTATTTAAGTTCTTAGCAGCTTCTGCAAGCTCAATTCTACTCAAACGTGTCAACATTCAGGTGCAGTTCCCTGCTCTTTTTGTAACATAATGTTCTAATCGATGTTAGTAGATGATTTGGTTTTATCACGCCTGAAATGATCCTTCAGGAATGGATACATTTGTTGCAGAGCATTCATTCGTATTGATTTGGTTGC

Ace file of the UniGene biog2_v2.0_unigene2973 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7379	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	casein kinase 2, beta polypeptide [Arabidopsis thaliana] sp\|O80507.1\|CSK2E_ARATH RecName: Full=Putative casein kinase II subunit beta-4; Short=CK II beta-4 gb\|AAC27470.1\| putative casein kinase II beta subunit [Arabidopsis thaliana] gb\|AAM65621.1\| putativ	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	casein kinase beta polypeptide	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	86%
Blast2go	positive regulation of circadian rhythm	GO:0042753	Biological Process	86%
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	86%
Blast2go	protein kinase regulator activity	GO:0019887	Molecular Function	86%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	86%
Blast2go	cytoplasm	GO:0005737	Cellular Component	86%
Blast2go	protein kinase CK2 complex	GO:0005956	Cellular Component	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Casein kinase II, regulatory subunit, alpha-helical	IPR016149	-	-
Sma3	Casein kinase II, regulatory subunit, beta-sheet	IPR016150	-	-
Sma3	Casein kinase II, regulatory subunit	IPR000704	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2P6

Fln msg: your sequence is shorter than subject: 38 - 284

Fln protein: TTFPHLFLMTYPTVKPPKPVQTYVPRVYGFKLHQSAR*

Protein Length: 39

Fln nts: GAACTACGTTTCCACATCTATTTCTGATGACCTATCCAACAGTGAAGCCACCCAAACCTGTGCAAACATATGTTCCACGTGTATATGGCTTCAAACTGCACCAGAGTGCCAGGTAG___CCGGTGTTCATGGCTATAGAAAGATTGACGCAAGTAAAATGCCATTTATATTGAAATTATTGGAATTTACTGCAGGCATTTGGAATTCTGATGGTTGGAATTGAAACAAGTTTGATGTCAAATGACATCAATTTATTCATTTTAAGAGGCCCCTTTTAAAGTCATTAATTTCAAGGGGGTTCCTTTTTGAAGTCGGCTTAATGGCTGGTTGGCTCTTTTTTTTATATCTGCCATTCTTATTTAAGTTCTTAGCAGCTTCTGCAAGCTCAATTCTACTCAAACGTGTCAACATTCAGGTGCAGTTCCCTGCTCTTTTTGTAACATAATGTTCTAATCGATGTTAGTAGATGATTTGGTTTTATCACGCCTGAAATGATCCTTCAGGAATGGATACATTTGTTGCAGAGCATTCATTCGTATTGATTTGGTTGC

Fln Alignment:

Contig2973___TTFPHLFLMTYPTVKPPKPVQTYVPRVYGFKLHQSAR
A9P2P6_________________TTFPHLFLMTYPTVKPPKPVQTYVPRVYGFKLHQSAR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
509			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain