SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2965

Length: 1568 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2965

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene804	35/35

Source	Descriptions	Term	Type	e value	Identity
AutoFact	coatomer subunit alpha-1 [Arabidopsis thaliana] sp\|Q94A40.2\|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb\|AAC28519.1\| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb\|U24105 fro	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein At1g62020; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Coatomer alpha subunit	IPR016391	-	-
Sma3	Coatomer, alpha subunit, C-terminal	IPR010714	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: Q56XA1

Fln msg:

Fln protein: MPVSQIWIQKSSLAGEHAASGNFDTAMRLLSRQLGIKNFCSIKTFVFGSLSRQPYIPSCICFCTCGLLGIRERLE*DC*PKCQRSTCFGI*VSLLDEKLRVAYKATTEGKFSEALRLFLTILHTIPVIVVDSRREVDEVKELIGIAKEYVLGLRMEVKRKEVKDDAVRQQELAAYFTHCNLQKVHLRLALLNAMGVCYKGGNFNTAANFARRLLESEPPANHATKARQVLQACERQLQDAKKLNYDFRNPFVVCGATFTPIYRGQKDVSCPYCTARFVPSVQGNLCPICELAVVGTDASGLLCSTTQIR*

Protein Length: 311

Fln nts: ATGGGATCTTGACATTGCTGAAGTTGAAGGACAAAATGGTGAGGTTGTGGTGGTAGATGATACAGAAGTGAGAGGAGACGATGATGAAGAGGGAGGATGGGATCTTGAAGATTTGGAGCTACCTGCAGATGTTGCTACTGCAAATGCTGCAGGTACAACTCATTCAACATCATTTGTTACCCCAACACCAGGT_-_ATGCCAGTAAGTCAAATCTGGATACAGAAATCTTCTCTTGCAGGTGAGCATGCAGCTTCTGGTAACTTTGATACAGCCATGCGCCTCTTAAGTCGACAACTTGGTATTAAGAATTTTTGCTCCATTAAAACCTTTGTTTTTGGATCTTTATCTCGGCAGCCATACATACCTTCCTGCATTTGTTTCTGCACCTGTGGTCTCCTTGGCATTAGAGAGAGGCTGGAGTGAGACTGCTAGCCCAAATGTCAGAGGTCCACCTGCTTTGGTATTTAGGTTTCTTTATTAGATGAGAAACTTAGAGTAGCTTACAAAGCCACCACAGAGGGGAAGTTTAGTGAAGCATTGAGGTTATTTCTTACCATCTTGCACACAATTCCAGTTATTGTTGTAGATTCAAGAAGGGAGGTTGATGAAGTGAAGGAATTGATTGGAATTGCTAAAGAATATGTTCTGGGTCTTCGAATGGAGGTCAAGAGAAAGGAAGTTAAGGATGATGCTGTTCGACAGCAAGAGCTTGCAGCCTATTTTACTCATTGCAACCTTCAAAAGGTCCATTTGAGGTTGGCTTTGCTGAATGCCATGGGAGTTTGCTACAAGGGAGGGAACTTCAATACAGCTGCTAACTTTGCTCGACGACTGCTGGAAAGTGAACCCCCTGCAAACCATGCAACAAAGGCCCGACAAGTTCTGCAGGCATGTGAGAGGCAGTTGCAGGATGCCAAAAAACTGAATTATGACTTTAGAAATCCTTTTGTTGTTTGTGGAGCAACTTTCACACCCATTTACCGTGGTCAGAAGGATGTCTCCTGTCCATATTGTACAGCACGCTTTGTTCCAAGTGTACAAGGGAATCTCTGCCCTATATGTGAGCTTGCAGTTGTGGGTACTGATGCTTCTGGGTTGCTTTGCTCAACTACTCAGATAAGGTGA___TGTCAGCAGCATTGGATTCTTGCTGACAATGCATTTTTATTTCAAGAAGTTCCATTGCCTGCGTATATGTCCGGATTGATGCTGTACTCTCTGCCTTTGAGAACCACGTTGAGAGATATGCCAGGACAATTTGTAACAAGTCTTGGACAAACTTGAGGGCCTTCTTAAGATATTGGAAGAAACAGTATATTGAAACTGAAATGAGGGTAGAAGTAATTTTCCATGTTTTTTCATTGTTTACTATTTGAAATTTAAGTCTGGTTTTTGCTTCCCTTTACCAGTCTCATACAATGAAAAGTGTGAGTCCTTTAGCTTATGTCTGGAGAATTTCTGATAGACACCAGGGTGTTTATCTTGTCTTTATCATGCAGATTTTCCAGTGGTTTGTCTGAGTATAAACAATAATTAGGCTTTTATTAGGCAACCTCAAGAAGTTACATTTAGG

Fln Alignment:

Contig2965___MPVSQIWIQKSSLAGEHAASGNFDTAMRLLSRQLGIKNFCSIKTFVFGSLSRQPYIPSCICFCTCGLLGIRERLE*DC*PKCQRSTCFGI*VSLLDEKLRVAYKATTEGKFSEALRLFLTILHTIPVIVVDSRREVDEVKELIGIAKEYVLGLRMEVKRKEVKDDAVRQQELAAYFTHCNLQKVHLRLALLNAMGVCYKGGNFNTAANFARRLLESEPPANHATKARQVLQACERQLQDAKKLNYDFRNPFVVCGATFTPIYRGQKDVSCPYCTARFVPSVQGNLCPICELAVVGTDASGLLCSTTQIR
Q56XA1_________________MPVSQSWSQKSSLAAEQAAAGSFDTAMRLLHRQLGIKNFTPLKSMFLDLFNGSHSYLRAFSSCPVVPLAIERGWSESSSPNVRSPPALVYDFSQLDEKLKSGYKATTTGKFTEALRLFLSILHTIPLVVVETRREVDEVKELIVIVKEYVLGLQMELKRREMKDDPVRQQELAAYFTHCNLQTPHLRLALLSAMGVCYKAKNLATASNFARRLLETSPVDSQAKMARQVVQAAERNMTDETKLNYDFRNPFVVCGSTYVPIYRGQKDVSCPYCTARFVPNQEGNICTVCDLAVIGADASGLLCSPSQVR

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
608	66		33		0.997452
609	66		33		0.997452
658	33		66		1.0
769	33		50		1.0
781	33			66	1.0
792	87			12	0.992554
841	85		14		0.993533
870	88		11		0.923564
915		85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain