SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2964

Length: 556 nt

UniGene Fasta

>biog2_v2.0_unigene2964
ATGGGGACAGTGCCCGCAGAGAAATTCTTACAAACATGACGACCATGTCGACAGCTCGAATACCGCCCGTATCTTCTCCCTGCATTGCTCTGAAACCCAAAGCCTTCTCCAGTACAGGCAAGCTTCCGCGGGTTTGTGCGAAGCCTGGATGGCTCAGAAAAGATTCAATGGGCTTGAACCTCAGACGTTCGGAATTCAGATCGGCGAAATTGACATGTTCACCATTGACAGTGTCTGCAATCGCATCGGCTTCAGAGCTTGTGAAGGAGAGCATTGATACAAAATCAGACCTGTTTGTCACCCGGGAGGAGGGCTTGGTCTTATATGAAGATATGGTTCTGGGCAGATCTTTTGAAGATATGTGTGCTCAGATGTATTACCGGGGAAAAATGTTTGGGTTTGTGCATCTCTACAATGGGCAGGAAGCTGTTTCAACTGGGTTTATTAAGATGCTGGAGGCTCATGATTCCGTCTGTAGCACTTACAGAGATCACGTGCATGCACTTAGCAAGGGAGTGTCTGCCCGAGCTGTGATGAGTGAACTCTTTGGTAAGAC

Ace file of the UniGene biog2_v2.0_unigene2964

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17947	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RNK3_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	pyruvate dehydrogenase e1 component subunit alpha-like	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Dehydrogenase, E1 component	IPR001017	-	0.0	-
Sma3	Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y	IPR017597	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRC3

Fln msg: Distance to subject end: 264 aas, your sequence is shorter than subject: 173 - 438

Fln protein: MTTMSTARIPPVSSPCIALKPKAFSSTGKLPRVCAKPGWLRKDSMGLNLRRSEFRSAKLTCSPLTVSAIASASELVKESIDTKSDLFVTREEGLVLYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKMLEAHDSVCSTYRDHVHALSKGVSARAVMSELFGK

Protein Length: 174

Fln nts: ATGGGGACAGTGCCCGCAGAGAAATTCTTACAAAC_-_ATGACGACCATGTCGACAGCTCGAATACCGCCCGTATCTTCTCCCTGCATTGCTCTGAAACCCAAAGCCTTCTCCAGTACAGGCAAGCTTCCGCGGGTTTGTGCGAAGCCTGGATGGCTCAGAAAAGATTCAATGGGCTTGAACCTCAGACGTTCGGAATTCAGATCGGCGAAATTGACATGTTCACCATTGACAGTGTCTGCAATCGCATCGGCTTCAGAGCTTGTGAAGGAGAGCATTGATACAAAATCAGACCTGTTTGTCACCCGGGAGGAGGGCTTGGTCTTATATGAAGATATGGTTCTGGGCAGATCTTTTGAAGATATGTGTGCTCAGATGTATTACCGGGGAAAAATGTTTGGGTTTGTGCATCTCTACAATGGGCAGGAAGCTGTTTCAACTGGGTTTATTAAGATGCTGGAGGCTCATGATTCCGTCTGTAGCACTTACAGAGATCACGTGCATGCACTTAGCAAGGGAGTGTCTGCCCGAGCTGTGATGAGTGAACTCTTTGGTAAGAC

Fln Alignment:

Contig2964___MTTMSTARIPPVSSPCIALKPKAFSSTGKLPRVCAKPGWLRKDSMGLNLRRSEFRSAKLTCSPLTVSAIASASELVKESIDTKSDLFVTREEGLVLYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKMLEAHDSVCSTYRDHVHALSKGVSARAVMSELFGK
B8LRC3_________________MTTMSTARIPPASSPCIARKPKASSNTGKLPRVYVKPGWLRKDLMGSNLRFSEFRSAKLPCSPLTVSAIASASELVKERIETKSELLVTREEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKMLKAHDSVCSTYRDHVHALSKGVPARAVMSELFGK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
89		20		80	0.995493
221	85		14		0.993533
285		16		83	0.994512
294		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain