SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2926

Length: 1415 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2926

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5950	38/38

Source	Descriptions	Term	Type	Identity
AutoFact	growth-on protein GRO10 [Euphorbia esula]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	signal peptide peptidase-like 2b-like	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	80%
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	80%
Blast2go	endosome	GO:0005768	Cellular Component	80%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Peptidase A22, presenilin signal peptide	IPR006639	-	-
Sma3	Peptidase A22B, signal peptide peptidase	IPR007369	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9U6

Fln msg: your sequence is shorter than subject: 345 - 537

Fln protein: AEVFLWLMAVGTILCASFWSAWSAREACNEHCKSLKDDPDAFVIEEDSGDKGVVDISTTSAIIFVVIASCFLILIYKFMSLWFLELLVVIFCIGGVEGMQTCLVALLSRWLTRARRLYVHIPFCGAVSALTLAVLPFCITFAVVWAVYRRNSFAWIGQDILGITLIITVLQIVRLPNVKVSTVLLGCAFLYDIFWVFVSHKLFHESVMIVVARGDRSGEDGIPMLLKIPRLYDPWGGYSIIGFGDILLPGLLIAFALRYDWAAKKTLQGGYFLWSMIGYGFGLFITYVALNLMDGNGQPALLYIVPCTLGTVITLGWLRGELSNLWSEGEPRMPCPHIGLKVGT*

Protein Length: 346

Fln nts: TTGCGGAAGTTTTTCTATGGCTTATGGCTGTGGGAACTATTCTGTGTGCTTCCTTTTGGTCAGCATGGAGTGCTAGAGAGGCATGCAATGAACACTGCAAGTCATTAAAGGATGATCCAGATGCTTTTGTCATTGAAGAAGATAGTGGGGATAAGGGTGTGGTTGATATCAGCACAACATCTGCAATTATTTTTGTAGTGATTGCATCATGCTTTCTAATTCTCATCTATAAATTCATGTCATTGTGGTTTCTGGAGCTTTTGGTCGTTATCTTCTGTATTGGTGGAGTTGAGGGTATGCAAACTTGTTTGGTTGCCTTGCTCTCCAGGTGGCTCACTCGTGCGAGAAGACTATATGTACACATACCTTTCTGTGGAGCTGTTTCAGCATTAACTTTGGCTGTGCTGCCATTTTGTATAACATTTGCTGTTGTATGGGCTGTTTATCGACGTAACTCATTTGCTTGGATTGGTCAAGATATACTCGGCATCACTTTGATCATAACTGTTCTTCAAATTGTACGGCTTCCTAATGTGAAGGTATCTACAGTTCTTCTAGGTTGTGCCTTTCTGTATGACATCTTTTGGGTGTTTGTTTCACATAAACTATTCCACGAAAGTGTGATGATTGTGGTTGCTCGTGGTGATAGAAGTGGAGAGGACGGCATACCCATGCTACTGAAAATTCCACGTTTGTATGATCCATGGGGTGGTTACAGCATCATTGGCTTTGGAGACATACTTTTACCAGGACTGCTGATAGCCTTTGCTTTAAGATATGATTGGGCAGCTAAGAAGACTTTGCAAGGAGGCTATTTTCTGTGGTCCATGATTGGCTATGGCTTTGGGCTGTTCATTACATATGTTGCTCTGAATCTGATGGATGGAAATGGACAACCTGCTCTTCTGTATATTGTTCCTTGTACCCTTGGCACTGTTATAACCTTGGGATGGTTGCGTGGTGAACTAAGTAATTTATGGTCAGAGGGAGAGCCTCGAATGCCTTGCCCACATATTGGACTCAAGGTTGGCACATGA___GTTCAGGGATGATGTTCTTTGCAGAGATTTATGGTCAAAGGCAGAGCCTCAAATGCCTTGCTCACATATTGGACCTAAGGTTGGCTCATGAGTTCAGGGATGGTTTTCTTTGCAGAGAATTTTCCTGCTTGAGTTGCATTCAAATCTGTACATTTTATCTTTACATTAATTTTATCAAATGCAATGCTAAGCATTAGCCAAGCTTGGATGCTCATGTCCTACTATTATCTGGTTCCTGCAGACAGTAACTTTTAGAATGTGGCATTTCCATCTAAGGAATATTAGTGCTGATTATATGCATGATAAGTTTATTTTAACCTACAAAATGCTCAAAAGCAGACTTTATCAGTCTAGTGAAAAGACATTTCTGATCTTTAT

Fln Alignment:

Contig2926___AEVFLWLMAVGTILCASFWSAWSAREACNEHCKSLKDDPDAFVIEEDSGDKGVVDISTTSAIIFVVIASCFLILIYKFMSLWFLELLVVIFCIGGVEGMQTCLVALLSRWLTRARRLYVHIPFCGAVSALTLAVLPFCITFAVVWAVYRRNSFAWIGQDILGITLIITVLQIVRLPNVKVSTVLLGCAFLYDIFWVFVSHKLFHESVMIVVARGDRSGEDGIPMLLKIPRLYDPWGGYSIIGFGDILLPGLLIAFALRYDWAAKKTLQGGYFLWSMIGYGFGLFITYVALNLMDGNGQPALLYIVPCTLGTVITLGWLRGELSNLWSEGEPRMPCPHIGLKVGT
D5A9U6_________________AEVFLWLMAVGTILCASFWSAWSAREACNEHCKSLKDDSDAFVMEENSGDKGVVDISTTSAILFVVIASCFLVLIYKFMSEWFLILLVIIFCIGGVEGLQTCLVALLSRWFTRARRLHIHIPFFGAVSALTLAVLPFCITFAVVWAVYRRISFAWIGQDILGITLIITVLQIVRLPNVKVSAVLLSCAFLYDIFWVFVSPKLFHESVMIVVARGDKSGEDGIPMLLKIPRLYDPWGGYSIIGFGDILLPGLLIAFALRYDWAAKKSLQGGYFLWSMIGYGFGLFMTYVALNLMDGNGQPALLYIVPCTLGTVLTLGWLRGELSNLWSKGEPQMPCPHVGPKVGT

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
389	83		16		0.994512
569		80		20	0.995493
860			10	90	0.90298
861	90		10		0.90298
862		90	10		0.90298
972	88		11		0.923564
974			11	88	0.923564
996		88		11	0.923564
1027	88		11		0.923564
1079	83			16	0.994512
1082		83	16		0.994512
1355	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain