SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2914

Length: 436 nt

UniGene Fasta

>biog2_v2.0_unigene2914
TATTGGCCAGTAATGGATTATGGGATGTACTCTCCAATGAAGAGGTTTGTGGGATAACTCGCAGATGCCTTGCCAAGTGGCTGCATAATAATAATAATGCTGCAACTAGCTCATCATCTTCTAAATCGAAGTCATGGAGAGATAGAAGGGCAGAAGAAATGGATCCATGCATGCAAGCAGTAGCGGAGCATCTTTCCAGGATGGCTTTTCAGCGTGGTAGCTCTGACAACATCACTGTGGTTGTGGTGGACTTGAGAAAAGAGAAGCCACAGACCTGAAACTCCAAAAAAAATGATGAATGGTTGATGGTTCTCTAACAGAATTTTATATAAATATATATATGTATGATGCCACCAGCTTGGGTCAAGTTTCCACAGCTTGATTACTTGTACATAATTTGATCTACAAGTTATACTCATTGCATGGAGATTAATGC

Ace file of the UniGene biog2_v2.0_unigene2914

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10264	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[T] COG0631 Serine/threonine protein phosphatase	-	-	1.0e-12	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	abscisic insensitive 1b	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	70%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8K0

Fln msg: your sequence is shorter than subject: 92 - 533

Fln protein: LASNGLWDVLSNEEVCGITRRCLAKWLHNNNNAATSSSSSKSKSWRDRRAEEMDPCMQAVAEHLSRMAFQRGSSDNITVVVVDLRKEKPQT*

Protein Length: 93

Fln nts: TATTGGCCAGTAATGGATTATGGGATGTACTCTCCAATGAAGAGGTTTGTGGGATAACTCGCAGATGCCTTGCCAAGTGGCTGCATAATAATAATAATGCTGCAACTAGCTCATCATCTTCTAAATCGAAGTCATGGAGAGATAGAAGGGCAGAAGAAATGGATCCATGCATGCAAGCAGTAGCGGAGCATCTTTCCAGGATGGCTTTTCAGCGTGGTAGCTCTGACAACATCACTGTGGTTGTGGTGGACTTGAGAAAAGAGAAGCCACAGACCTGA___AACTCCAAAAAAAATGATGAATGGTTGATGGTTCTCTAACAGAATTTTATATAAATATATATATGTATGATGCCACCAGCTTGGGTCAAGTTTCCACAGCTTGATTACTTGTACATAATTTGATCTACAAGTTATACTCATTGCATGGAGATTAATGC

Fln Alignment:

Contig2914___LASNGLWDVLSNEEVCGITRRCLAKWLHNNNNAATXXXXXXXXXWRDRRAEEMDPCMQAVAEHLSRMAFQRGSSDNITVVVVDLRKEK
D5A8K0_________________LASDGLWDVLSNDVVCEVARKCLAGYRPHRSKGITE-----------------DTPVGAAAALLTKLALGRGSGDNISVVVIDLKERR

SSRs (tot: 1)

Start position	End position	Sequence	Length
85	98	ATA ATA ATA ATA AT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain