SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2887

Length: 1318 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2887

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16589	1/37
SustainPine v2.0	sp_v2.0_unigene24999	36/37

Source	Descriptions	Term	Type	Identity
AutoFact	putative inosine-uridine preferring nucleoside hydrolase, 3'-partial (with alternative splicing) [Oryza sativa Japonica Group]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	probable uridine nucleosidase 2-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inosine nucleosidase.	EC:3.2.2.2	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	81%
Blast2go	inosine catabolic process	GO:0006148	Biological Process	81%
Blast2go	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	81%
Blast2go	inosine nucleosidase activity	GO:0047724	Molecular Function	81%
Blast2go	cytosol	GO:0005829	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Inosine/uridine-preferring nucleoside hydrolase domain	IPR001910	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKP9

Fln msg:

Fln protein: MADIGVENKRKKIIIDTDPGIDDAMAIFLALQSPEVDVIGLTTIYGNVRTTLATTNALHLLEVAGREDIPVAEGSHTSIKEVPKLRTAAFAHGSDGLGETNIDPPKGKPIAQSASGFLVEKANKFPGEVTVVALGPLTNIALAIKSNPDFPQKIRQIIILGGAFSVNGNVNPATEANIFGDPEAADIVFTCGADIIAIGINITHQVVLTDKDVEDLASSSGKYAKYICNILKFYFDYHHEAYNICGAYLHDPTVMFAAIDPSLMTYAEGVVRVQADGIFRGLTLFDNMKKRWGEVTEWSNKPRVKVAVSVDGDKIVHLLKERLKNS*

Protein Length: 328

Fln nts: ATGGGGACTCTGGTTGTTTCTCCGAGGGCGAAGGGAAACCGACCGTGCAAAAGTTCTCCCAGTTACATCCTGACTGATACTTCGACGAAACTTGTTTGTGTCTCACAGCTTTCCTCCTGGTTCAGCTGGTGGTGGTGGTGGTGGTGCTTGGATCG_-_ATGGCCGACATAGGCGTGGAGAATAAGAGGAAGAAAATCATTATTGACACTGACCCTGGCATAGATGATGCCATGGCAATCTTTTTGGCTCTTCAGTCTCCAGAGGTTGATGTTATTGGTCTCACTACAATTTATGGAAATGTCCGTACAACTTTGGCAACAACAAATGCCCTTCATCTGTTGGAAGTTGCAGGGAGAGAAGATATCCCTGTTGCAGAAGGTTCACACACATCAATCAAGGAAGTTCCAAAGCTGCGAACTGCAGCTTTTGCCCATGGTTCTGATGGCCTTGGGGAGACCAATATTGACCCACCAAAAGGGAAGCCAATTGCACAATCAGCATCAGGTTTTCTCGTTGAGAAAGCGAATAAATTCCCTGGAGAAGTGACAGTGGTTGCATTGGGGCCACTCACAAACATAGCGTTGGCAATAAAATCAAATCCTGACTTTCCGCAGAAAATAAGGCAGATTATTATTCTTGGGGGAGCATTTTCAGTGAATGGAAATGTTAACCCTGCTACGGAAGCAAATATTTTTGGCGACCCAGAAGCTGCCGATATTGTATTCACATGTGGAGCAGATATCATAGCTATTGGAATCAATATTACACATCAAGTTGTTCTGACAGATAAAGATGTTGAAGATCTGGCAAGCTCCAGTGGGAAATATGCCAAGTATATTTGCAACATTTTGAAGTTCTATTTTGACTATCATCACGAGGCCTACAATATATGTGGAGCCTATCTTCATGATCCTACTGTGATGTTTGCGGCTATTGATCCCTCACTCATGACATACGCAGAAGGTGTAGTTAGAGTCCAGGCAGATGGTATATTCAGGGGCCTCACTCTATTTGATAACATGAAAAAGAGGTGGGGCGAAGTTACGGAGTGGTCGAATAAACCGAGAGTAAAAGTGGCAGTGTCAGTGGATGGTGACAAAATCGTACACTTGCTCAAAGAGCGATTGAAGAACTCCTAG___ATTTAAATTGAATTTTGTCAATTCATAGAAATTAACTGAAATTCGTTCACTTGAGTTCTTTTGAAACAGCTCTGAGATCTTGCAGTTCCTTGTATAAGTCCCCATCGAGTTGTTAAGGCTCTATAGTTGGGATTTTTTGTTAATTTTCCATTGCTGTTGATTTGAACTCAAACAACTATCAC

Fln Alignment:

Contig2887___MADIGVENKRKKIIIDTDPGIDDAMAIFLALQSPEVDVIGLTTIYGNVRXXXXXXXXXXXXEVAGREDIPVAEGSHTSIKEVPKLRTAAFAHGSDGLGETNIDPPKGKPIAQSASGFLVEKANKFPGEVTVVALGPLTNIALAIKSNPDFPQKIRQIIILGGAFSVNGNVNPATEANIFGDPEAADIVFTCGADIIAIGINITHQVVLTDKDVEDLASSSGKYAKYICNILKFYFDYHHEAYNICGAYLHDPTVMFAAIDPSLMTYAEGVVRVQADGIFRGLTLFDNMKKRWGEVTEWSNKPRVKVAVSVDGDKIVHLLKERLKNS
B8LKP9_________________MGDIGVENKRKKIIIDTDPGIDDAMAIFLALQSPEVDVIGLTTIYGNVRTTLATTNALHLLEVAGREDIPVAEGSHTSIKEVPKLRFAAFAHGCDGLGEINIVPPKGKPIPQSASDFLIEKANEFPGEVTVVALGPLTNIAKAIESNADFPQKIRQIVILGGAFSVNGNVNPATEANIFGDPEAADIVFTCGADIIAVGINITHQVVLTDKDLEDLASSSGKYAKYVCNILKFYIDYHLEAYNIRGAYLHDPTVMFVAIDPSLMTYAEGVVRVQADGIFRGLTLFDNMKKRWGEVTEWSNKPSVKVAVSVDGDKIIHLLKERLKNS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
482		66		33	0.997452
583		33		66	0.997452
764	66		33		0.997452
926	83			16	0.994512
1005	11		77		0.968132
1066	72		18		0.999994
1069			81	18	0.999994
1117			90	10	0.90298
1126	20		80		0.999996
1164	77	22			0.999999
1172	22		77		0.999999
1175	66		33		1.0
1178	77		22		0.999999

SSRs (tot: 1)

Start position	End position	Sequence	Length
127	146	TGG TGG TGG TGG TGG TGG TG	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain