SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2857

Length: 1551 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2857

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1176	24/24

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EREBP-3 homolog n=2 Tax=Stylosanthes hamata RepID=Q9ZR83_STYHA	-	-	2.0e-17	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	ethylene-responsive element binding factor-like protein	-	-	7.20587e-20	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	7.20587e-20	88%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	7.20587e-20	88%
Blast2go	DNA binding	GO:0003677	Molecular Function	7.20587e-20	88%
Blast2go	nucleus	GO:0005634	Cellular Component	7.20587e-20	88%

Source	InterPros	Term	Type	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Ubiquinol cytochrome reductase, transmembrane domain	IPR004192	-	-
Sma3	Rieske iron-sulphur protein, C-terminal	IPR005805	-	-
Sma3		IPR005806	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Ubiquinol-cytochrome c reductase, iron-sulphur subunit	IPR006317	-	-
Sma3	Rieske iron-sulphur protein	IPR014349	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMP1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 53 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 93 - 225

Fln protein: MLTQPKVAPKDVGSAYKEVHFRGVRKRPWGRFAAEIRDPMKKTRVWLGTFDTAEEAARAYDSAARALRGPKAKLILRLFLPVMIGVLVLAAL*

Protein Length: 94

Fln nts: TGGATTGCCCCGATCTGGGTTTACTGGGTCAGAAGCTGGTATTTGAGGTCTGTTCTTCCTTCTGGTCGCAAAAGTCCTTTGTTCAGGGTGCCTGGGGTCTTACGATTTTGTGTTTCATTCTAGTGTTATAGATTGTCTAGCGGTTTAGAGCCGCCATTGGGTACTCGTTGTTTGGTCTTACTGCCCCGAAACACAAATTTTTTTGATCTCTCAGGTCAACTGGCTCATGCGGTTTGGCATTTGTGCCCAAAAGCCATAGAGATCTGGGTTTTGTAGAGCATTTGGAATCTTCAGACGTTGGTGTCATCCTAAAATTCAAAGGATTTTTGGTGCTATAGAATCCTGGGGTCTCAAGATTTGGTCCTATCAAGGAAACCACTCAAAGGACGTTCTTGTATTTTAGAGTACTCGGGGGTGTTGAGATTTGTTGCTGTATTCAAAACAGTCAACGGGCCTTTCGGTAGCACTGAAGTTCGTTGAGGTTTGATCATCTGAGTTCTTTTGGCCCTCAAATTTGGCCGTTTTGGTCCAGGGAAATATCATCTTGATCGCCGCAGCACTTGGGTTATCAAGATTTGATGTGTTTACTTTGGAAAACTTTCAACAAATTGAAGGGTTTGATCATCAGCACTTGTACTGCTGGCTTGTTTCTTGTATTGAATGAAATCGGAAAGGTTTGAATATCTTAATAACCAGTGTGTCCTCATTCTCCCAGATTTGGGATTATCGGCTTCTGATCATCAGAGCCTTTGAATCTCTCGTTGTTGACCTCTGTTTCTGTTTCAAAAATATCAACTATGATCGCCGCAGGGCCTCAGGTTATCCAAAATTGATGTATTTGCATAAATACTTGCAATAAATTGAAGGGCTTGATCGTCAGAACGCGGGGTTCTGCAGATTTGGTGAGTTGAAATAAATTGCCAAAGGTTGAAGATTGCAATAACCAGAGTGTTTTGATCCTGCCAGATTTATTATATTTGTTTATAAAATATCAAAAAGTTGAGGATTTTGAGTACTTGGCTGTTGCATTGCTGATTGGTTTTGAAGAAACCAGATAGATCGAAGCTATTTTTTTTTGAAAGATCTATTCTTTAAGA_-_ATGTTGACACAGCCAAAGGTGGCGCCGAAAGATGTTGGATCTGCATACAAAGAAGTCCATTTCAGAGGTGTCAGAAAGAGGCCATGGGGAAGGTTTGCTGCAGAAATCAGAGATCCAATGAAGAAAACCCGTGTATGGCTCGGGACATTTGACACAGCAGAGGAAGCAGCCAGAGCATATGATAGTGCAGCCAGAGCACTCAGAGGACCCAAGGCAAAACTAATTTTGCGTTTGTTCCTCCCTGTGATGATAGGAGTACTAGTCTTAGCAGCACTGTAGAGTCTTGGAGCAGTCCCAAGAATAACACTAATAATAATACAAGGAAAACCTATCCTTGAATAAAGCAGATGGCATAACACATAAGATTGATCTGAACATTGCGCAAGAGGAGTTTGGCAGGAAAGGTTCTGTACCATATTTAGAAGATAAGATCCTCAATATATCAAAGAAACAG

Fln Alignment:

Contig2857___VAPKDVGSAYKEVHFRGVRKRPWGRFAAEIRDPMKKTRVWLGTFDTXXXXXXXXXXXXXXLRGPKAK
A9NMP1_________________VCEVEASSAVKETHFRGVRKRPWGRFAAEIRDPLKKTRVWLGTFDTAEEAARAYDNAARNLRGAKAK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
548		16		83	0.994512
564		16		83	0.994512
618			83	16	0.994512
733	40		60		1.0
744		40		60	1.0
752		20		80	0.995493
753	20			80	0.995493
810	33		66		0.997452
872		66		33	0.997452
1080			33	66	0.997452
1081			80	20	0.995493
1307	83			16	0.994512
1486		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain