SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2851

Length: 1030 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2851 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20457	48/48

Source	Descriptions	Term	Type	Identity
AutoFact	ER lumen protein-retaining receptor-like [Oryza sativa Japonica Group] gb\|EEC84948.1\| hypothetical protein OsI_32165 [Oryza sativa Indica Group]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	er lumen protein retaining receptor-like	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	ER lumen protein retaining receptor	IPR000133	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NND2

Fln msg: your sequence is shorter than subject: 251 - 275

Fln protein: KGFLAVITGIVSLLFLKLVVHDHDNLFVAAEAIHALGISVLIYKLMKEKTCAGLSLKSQELTALFLAVRLYCSFVMEYDIHTLLDLATLITTLWVIYMIRYKLKSTYMEDLDNLPIYYVVIPCALIALVIHPRTSHYIVNRILWAFCVYLEAVSVLPQLRTMQNTRVVEPFTAHYVFALGVVRFLSCAHWILQVLDSHGYLLTALGHGLWPSMVLLSEIIQTFILADFCYYYVKSVVGGQLVVRLPAGVV*

Protein Length: 252

Fln nts: AAGGGTTTTCTGGCTGTAATAACAGGCATTGTTTCTCTACTTTTCCTGAAGTTGGTGGTTCATGATCACGATAATTTATTTGTAGCTGCAGAAGCCATTCATGCCCTTGGAATCTCCGTATTGATCTATAAATTAATGAAGGAGAAGACATGTGCAGGCTTGTCACTTAAATCTCAGGAGCTCACTGCTTTATTCTTAGCAGTGAGGCTATATTGCAGTTTTGTTATGGAGTATGATATCCACACGTTACTGGATTTGGCAACATTAATAACCACCTTATGGGTTATCTATATGATACGATACAAACTAAAATCAACCTATATGGAGGATTTGGACAATCTTCCAATATATTATGTGGTCATTCCATGTGCTCTGATTGCTTTGGTAATTCATCCAAGAACATCACATTATATTGTAAACAGGATTCTTTGGGCATTTTGTGTATATCTGGAAGCTGTGTCAGTTCTTCCTCAACTTCGTACAATGCAGAACACGAGGGTAGTTGAACCGTTTACAGCCCATTATGTCTTCGCATTGGGTGTTGTCAGGTTCTTAAGCTGTGCACATTGGATACTACAGGTTTTGGATAGCCATGGCTACTTATTGACTGCTCTTGGCCATGGCTTATGGCCATCCATGGTGCTTCTGTCTGAAATCATTCAGACATTTATATTGGCAGATTTCTGTTACTACTATGTTAAAAGTGTTGTAGGTGGTCAACTTGTAGTGCGCCTTCCTGCTGGTGTGGTGTAA___GAACTGTCATCTACAAGGCTGGCAAGCTAAAGGTCTTTCTTTTGCCAAATCAATGTTGGGACTTTGCTGGAAGATAAACTTTCAGACAATTAATTTGTACTCGTGCTCCCATCATTTATCTGCACTACAGAATGTGCTAGTTAGATTAGAAGAGGTTGGAAGAGTTTTATTGTTTGAATGTAAGCTTTGTCATCTAAAAAGCTAGCATGTTCTAATTACAAAGCCCTGCTGTTAATGACCTGTTTTTTATTCCGGAGGTTGAATATAAAGGAAACTA

Fln Alignment:

Contig2851___KGFLAVITGIVSLLFLKLVVHDHDNLFVAAEAIHALGISVLIYKLMKEKTCAGLSLKSQELTALFLAVRLYCSFVMEYDIHXXXXXXXXXXXLWVIYMIRYKLKSTYMEDLDNLPIYYVVIPCALIALVIHPRTSHYIVNRILWAFCVYLEAVSVLPQLRTMQNTRVVEPFTAHYVFALGVVRFLSCAHWILQVLDSHGYLLTALGHGLWPSMVLLSEIIQTFILADFCYYYVKSVVGGQLVVRLPAGVV
A9NND2_________________KGFLAVITGIVSLLFLKLVVHDHDNLFVAAEAIHALGISVLIYKLTKEKTCAGLSLKSQELTALFLAVRLYCSFVMEYDIHTLLDLATLATTIWVIYMIRYKLRSTYMDDLDNLPIYYVVIPCALLALAIHPRTTHYIVNRILWAFCVYLEAVSVLPQLRTMQNTRVVEPFTAHYVFALGVVRFLSCAHWILQVMDSHGYLLTALGHGLWPSMVLLSEIVQTFILADFCYYYVKSVVGGQLVVRLPAGVV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
934	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain