SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2826

Length: 1730 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2826 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16764	34/34

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit 8 n=3 Tax=Spermatophyta RepID=Q9M613_PINTA	-	-	95%
FL-Next	tr=26S proteasome regulatory subunit 8; Pinus taeda (Loblolly pine).	-	-	97%
Blast2go	26s proteasome regulatory particle triple-a atpase subunit6	-	-	98%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	98%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	98%

Source	GOs	Term	Type	Identity
Blast2go	ATPase activity	GO:0016887	Molecular Function	98%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	98%
Blast2go	plasma membrane	GO:0005886	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9M613

Fln msg: Overlapping hits, possible frame ERROR between 370 and 348, and possible frame ERROR between 1156 and 1159,

Fln protein: MRVEELGGILKPASDLEAAANAKEKLKEKHQLPKESNRMVKHGEGLRQYYLQHIHDLQLQVRQKTHNLNRLEAQRNDLNSKVRALREELQLLQEPGSYVGxxxxxxxxxSKVLVKVHPEGKYVVDVDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRK*I*CGAxxLKKLLKK*VVHQVQSLRLYAQKLGCLHCGSDVSMLHKKILKWL*LRL*

Protein Length: 420

Fln nts: ATGGGGCTCTTCATTTTTCCGTCATTTCGTCTGAGGGTTTGTAGCG_-_ATGCGTGTAGAGGAACTCGGAGGAATTCTGAAACCTGCCTCAGACTTGGAGGCCGCTGCAAACGCGAAGGAAAAATTGAAGGAGAAACATCAGCTCCCCAAAGAATCTAACAGAATGGTGAAGCATGGCGAGGGTTTGCGCCAGTATTACCTTCAACATATTCACGATCTCCAGCTCCAGGTCCGTCAGAAGACGCACAATCTCAACCGTCTTGAAGCCCAGCGGAACGATCTTAATTCCAAAGTGAGAGCACTGAGGGAGGAATTACAGTTGCTCCAGGAACCGGGATCGTATGTTGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxTCTAAAGTTTTGGTTAAGGTGCATCCTGAAGGAAAGTATGTAGTTGATGTAGACAAGAACATTGACATAACAAAAATCACACCTTCTACAAGAGTAGCTCTTCGTAATGATAGCTACGTGCTTCATTTGATTTTGCCTAGCAAAGTAGACCCGTTGGTCAACCTGATGAAGGTGGAGAAAGTGCCGGATTCTACATATGACATGATTGGAGGACTTGACCAACAGATTAAGGAAATCAAAGAGGTTATCGAGCTTCCTATCAAGCATCCAGAACTGTTTGAAAGTCTTGGAATAGCTCAACCAAAGGGTGTACTGTTGTATGGACCCCCTGGCACTGGAAAGACATTGCTTGCAAGGGCAGTTGCTCATCACACAGACTGCACCTTTATTAGAGTTTCAGGTTCTGAATTGGTTCAGAAGTACATAGGTGAAGGATCAAGGATGGTTCGTGAGCTTTTTGTTATGGCAAGAGAACATGCTCCCTCGATTATATTTATGGATGAAATTGACAGTATAGGATCTGCTCGAATGGAGTCTGGCACTGGTAATGGTGATAGTGAAGTCCAGCGAACTATGCTTGAGCTCCTTAATCAACTTGATGGCTTTGAGGCATCTAATAAGATTAAGGTTCTAATGGCTACAAACCGGATAGATATTCTTGATCAAGCACTTCTTCGACCTGGTAGGATTGACAGGAAAATTGAATTTCCTAATCCTAATGAAGAGTCTCGTTTTGACATTCTGAAAATCCACTCAAGAAAATGAATCTAATGCGGGGCATTxxxTCTAAAGAAATTGCTGAAAAAATGAGTGGTGCATCAGGTGCAGAGCTTAAGGCTGTATGCACAGAAGCTGGGATGTTTGCATTGCGGGAGCGACGTGTCCATGTTACACAAGAAGATTTTGAAATGGCTGTAGCTAAGGTTATGA___AAAAGGAAACAGAGAAGAACATGTCACTGAGGAAACTATGGAAGTAAGGAAAGGATCAGTGGATTCGTTGGTTCAATATATCAAGCTACTGTGTGTATTTCAGTGGGTTAAACATGTCCAAGTGGTTGTATTACTTGCGATGGCAACATGGAAAATAAGTGGATATTTTGCAAGTGAAATTTGTTTCTAAATTCATTTTGGGCTTGAAGATGCCTTGGTCTATATATTCTCTGCGGGAAGCTTGGACTTCGAATCAAAAAATTTGTTAATTTCCAAAGCACAAAAACATCCTCATCTCTTATTTTAGCAAGAATTAGAAATGTGGTTATAGTTATTGTTGAATATCATGTCAGATATGGCAGTGCTTTTCAAATTACGGTTTGGAACTTTCTCCCAGAGATGCATATAGTGTTGCACCTTTGTAAGAATT

Fln Alignment:

Contig2826___MRVEELGGILKPASDXXXXXXXXXXXXXKHQLPKESNRMVKHGEGLRQYYLQHIHDLQLQVRQKTHNLNRLEAQRNDLNSKVRALRXXXXXXXEPGSYVGxxxxxxxxSKVLVKVHPEGKYVVDVDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKxKEIAEKMSGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK
Q9M613_________________MRVEELGGILKPASDLEAAANAKEKLKEKHQLPKESNRMVKHGEGLRQYYLQHIHDLQLQVRQKTHNLNRLEAQRNDLNSKVRALREELQLLQEPGSYVGxxxxxxxxSKVLVKVHPEGKYVVDVDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKxKKIAEKMSGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
126		33		66	0.997452
127	66	33			0.997452
129	66			33	0.997452
340	83	16			0.994512
345			83	16	0.994512
400		25		75	0.996473
572	33			66	0.997452
573		33		33	0.997753
575		33		66	0.997452
902	80	20			0.995493
903		20		80	0.995493
905	80			20	0.995493
1240	80	20			0.995493
1649		28		71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain