SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2825

Length: 1209 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2825 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16959	23/23

Source	Descriptions	Term	Type	Identity
AutoFact	putative Eukaryotic translation initiation factor 3 subunit 8 [Oryza sativa Japonica Group]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Eukaryotic translation initiation factor 3 subunit 8, N-terminal	IPR008905	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7W0

Fln msg: Overlapping hits, possible frame ERROR between 671 and 671, Distance to subject end: 95 aas,

Fln protein: MDSLVSLIYKHGDERTKARAMLCDIYHHAILDQFSMARDLLLMSHLQDGVQHMDISTQILFNRAMAQLGLCAFRASLISEAHGCLSDLYAGGRVKELLAQGVQQSRYHEKTPEQEKLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANTHDVRRKVISRTFRRLLEINERQTFTGxxENVRDHVMAATRALSKGDWKKAYEVIASLDIWKLLREKEKVLEMLKFKIHEEALRTYIFTYSSCYSSMSLDQLETIFELSEAQVHSIVSKMMVAEEFHASWNQPTRCIVTHDVEPTRLQALASQFAEKLSGLVDINERAFDARTGGGQEGPSANRRRENQDYAGAASGRWQADFSAGQ

Protein Length: 361

Fln nts: TGG_-_ATGAGGACGGCAAAGTTATTGTAGAACCTAAGATAACTGAAGAAATCAGAGGACCACCGGCATTCATTGTTACTACAGAAATTGTGCCAAGGAGGCCAACATTTCCAGAGCATAGCAGGAGCCTTATGGATTCTCTAGTGTCTCTCATTTATAAGCATGGTGATGAGCGAACAAAAGCGAGGGCCATGCTTTGTGATATTTATCACCATGCAATATTGGATCAGTTTTCTATGGCTAGGGATTTATTGCTCATGAGCCACTTGCAGGATGGGGTACAACACATGGATATTTCCACCCAGATACTTTTCAATCGAGCAATGGCTCAACTTGGTCTCTGTGCTTTCCGAGCATCTCTAATTTCAGAAGCACACGGCTGCCTTTCTGACCTCTATGCAGGGGGCAGGGTTAAGGAATTGCTGGCCCAAGGTGTACAACAGAGTCGATATCATGAAAAAACTCCAGAGCAGGAAAAACTTGAGAGGAGGCGTCAAATGCCTTACCACATGCATATTAATTTGGAACTGCTTGAAGCAGTACATCTGATTTGTGCCATGCTCTTGGAAGTACCAAATATGGCTGCTAATACACATGATGTCAGAAGGAAGGTGATTAGTAGGACTTTCCGCCGTTTATTGGAGATTAATGAGAGGCAAACATTTACTGGTxxxxxxGAGAATGTTCGTGATCATGTTATGGCTGCAACACGTGCATTAAGCAAAGGTGATTGGAAGAAAGCATATGAAGTCATTGCAAGTCTTGACATCTGGAAGCTTCTACGAGAGAAAGAGAAGGTACTAGAAATGTTGAAGTTCAAAATTCATGAAGAAGCTCTGAGAACTTACATATTTACCTATTCTTCATGCTATAGTTCTATGAGCTTAGATCAGCTGGAAACTATATTTGAGCTTTCTGAAGCACAAGTGCACAGCATAGTTAGCAAGATGATGGTTGCAGAAGAATTTCATGCCAGCTGGAATCAGCCTACACGTTGCATTGTTACTCATGATGTAGAGCCTACCAGATTACAAGCCCTGGCATCACAGTTTGCTGAGAAATTGTCAGGTCTTGTTGATATCAATGAGAGAGCTTTTGATGCTCGAACTGGCGGCGGCCAAGAGGGGCCTTCTGCAAATAGGCGAAGAGAGAACCAAGATTATGCTGGTGCTGCTTCTGGTCGATGGCAAGCTGATTTTTCAGCTGGTCAAGG

Fln Alignment:

Contig2825___MPYHMHINLELLEAVHLICAMLLEVPNMAANTHDVRRKVISRTFRRLLEINERQTFTGPPENVRDHVMAATRALSKGDWKKAYEVIASLDIWKLLREKEKVLEMLKFKIHEEALRTYIFTYSSCYSSMSLDQLETIFELSEAQVHSIVSKMMVAEEFHASWNQPTRCIVTHDVEPTRLQALASQFAEKLSGLVDINERAFDARTGGGQEGPSANRRRENQDYAGAASGRWQADFSAGQ
D5A7W0_________________MPYHMHINLELLEAVHLICAMLLEVPNMAANTHDVRRKVISRTFRRLLEINERQTFTGPPENVRDHVMAATRALSKGDWKKAYEVIVSLDTWKLLREKEKVLEMLKFKIHEEALRTYIFTYSSCYSSMSLDQLETIFELSEVQVHSIVSKMMVAEEFHASWNQPTRCIVTHDVEPTRLQALASQFAEKLSGLVDINERAFDARTGGGQEGPSGNRRRENQDYAGAASGRWQADFSAGQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
466		40		60	1.0
522	75	25			0.996473
523		25		75	0.996473
524	75	25			0.996473
676	66	33			0.997452
677		33	66		0.997452
996	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain